The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics, Cornet, Luc, Durieu Benoit, Baert F., D'hooge Elizabet, Colignon David, Meunier Loic, Lupo Valérian, Cleenwerck Ilse, Daniel Heide-Marie, Rigouts Leen, et al. , GigaScience, Apr-12-2025, Volume 12, (2023)

Multicentric Analysis of the Species Distribution and Antifungal Susceptibility of Clinical Isolates from Aspergillus Section Circumdati, Imbert, S., Normand A. C., Costa D., Gabriel F., Lachaud L., Schuttler C., Cassaing S., Mahinc C., Hasseine L., Demar M., et al. , Antimicrobial Agents and Chemotherapy, Jun-04-2024, Volume 67, Issue 4, (2023)

Pulmonary Aspergillosis in Humboldt Penguins?Susceptibility Patterns and Molecular Epidemiology of Clinical and Environmental Aspergillus fumigatus Isolates from a Belgian Zoo, 2017?2022, Debergh, Hanne, Becker Pierre, Vercammen Francis, Lagrou Katrien, Haesendonck Roel, Saegerman Claude, and Packeu Ann , Antibiotics, Jan-03-2023, Volume 12, Issue 3, (2023)

Pulmonary Aspergillosis in Humboldt Penguins?Susceptibility Patterns andMolecular Epidemiology of Clinical and Environmental Aspergillus fumigatus Isolates from a Belgian Zoo, Debergh, Hanne, Becker Pierre, Vercammen F., Lagrou K., Haesendonck Roel, Saegerman C., and Packeu Ann , Antibiotics, 15/03/2023, Volume 12, Issue 3, (2023)

Remarkable fungal biodiversity on northern Belgium bats and hibernacula., Becker, Pierre, Van den Eynde Claudia, Baert F., D'hooge Elizabet, De Pauw Robby, Normand Anne-Cécile, Piarroux Renaud, and Stubbe Dirk , Mycologia, 2023 Jul-Aug, Volume 115, Issue 4, (2023)

Remarkable fungal biodiversity on northern Belgium bats and hibernacula, Becker, Pierre, Van den Eynde Claudia, Baert F., D'hooge Elizabet, De Pauw Robby, Normand Anne-Cécile, Piarroux Renaud, and Stubbe Dirk , Mycologia, Apr-07-2023, Volume 115, Issue 4, (2023)

Towards Characterization and genotoxicity assessment of mycotoxin mixtures present in food., Sanders, Julie, Johnson George, Anthonissen Roel, Becker Pierre, Tangni Emmanuel, Masquelier Julien, Vanhaecke Tamara, and Mertens Birgit , BelTox Annual Meeting , 07/12/2023, Brussels, Belgium, (2023)

High diversity of yeast species and strains responsible for vulvovaginal candidiasis in South-East Gabon., Bignoumba, M , J Mycol Med, 2022 Nov 25, Volume 33, Issue 2, (2022)

High diversity of yeast species and strains responsible for vulvovaginal candidiasis in South-East Gabon, Bignoumba, M., Onanga R., Kumulungui B.S., Kassa Kassa R.F., Mouanga Ndzime Y., Mbombe Moghoa K., Stubbe Dirk, and Becker Pierre , Journal of Medical Mycology, Jan-11-2022, (2022)

Identification of Molds with Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry: Performance of the Newly Developed MSI-2 Application in Comparison with the Bruker Filamentous Fungi Database and MSI-1., Normand, Anne-Cécile, Blaize Marion, Imbert Sébastien, Fekkar Arnaud, and Piarroux Renaud , J Clin Microbiol, 2021 Sep 20, Volume 59, Issue 10, (2021)

Identification of Molds with Matrix-Assisted Laser Desorption Ionization?Time of Flight Mass Spectrometry: Performance of the Newly Developed MSI-2 Application in Comparison with the Bruker Filamentous Fungi Database and MSI-1ABSTRACT, Normand, Anne-Cécile, Blaize Marion, Imbert Sébastien, Packeu Ann, Becker Pierre, Fekkar Arnaud, Stubbe Dirk, and Piarroux Renaud , Journal of Clinical Microbiology, Aug-09-2022, Volume 59, Issue 10, (2021)

The taxonomy of the Trichophyton rubrum complex: a phylogenomic approach, Cornet, Luc, D'hooge Elizabet, Magain Nicolas, Stubbe Dirk, Packeu Ann, Baurain Denis, and Becker Pierre , Microbial Genomics, Mar-11-2021, Volume 7, Issue 11, (2021)

Blastomycosis in Africa and the Middle East: A Comprehensive Review of Reported Cases and Reanalysis of Historical Isolates Based on Molecular DataAbstractBackgroundMethodsResultsConclusions, Schwartz, Ilan S., Muñoz Jose F., Kenyon Chris R., Govender Nelesh P., McTaggart Lisa, Maphanga Tsidiso G., Richardson Susan, Becker Pierre, Cuomo Christina A., McEwen Juan G., et al. , Clinical Infectious Diseases, Jul-08-2020, Volume 73, Issue 7, (2020)

Screening strategy targeting the presence of food enzyme-producing fungi in food enzyme preparations, Deckers, Marie, Vanneste Kevin, Winand Raf, Hendrickx Marijke, Becker Pierre, De Keersmaecker Sigrid C. J., Deforce Dieter, Fraiture Marie-Alice, and Roosens Nancy , Food Control, Jan-11-2020, Volume 117, (2020)

Superficial mycoses in Belgium: Burden, costs and antifungal drugs consumption, Becker, Pierre, Lecerf Pauline, Claereboudt Julie, Devleesschauwer Brecht, Packeu Ann, and Hendrickx Marijke , Mycoses, Jan-05-2020, Volume 63, Issue 5, Number 508, (2020)

Unexpected mould diversity in clinical isolates from French Guiana and associated identification difficulties., Nabet, C, Imbert S, Normand A C, Blanchet D, Chanlin R, Becker Pierre, Demar M, and Piarroux R , Med Mycol, 2020 Oct 27, Volume 59, Number 599, (2020)

Identification of fungal isolates by MALDI-TOF mass spectrometry in veterinary practice: validation of a web application., Becker, Pierre, Normand Anne-Cécile, Vanantwerpen Gerty, Vanrobaeys Mia, Haesendonck Roel, Vercammen Francis, Stubbe Dirk, Piarroux Renaud, and Hendrickx Marijke , J Vet Diagn Invest, 2019 May, Volume 31, Issue 3, Number 474, (2019)

Public microbial resources centres: key hubs for FAIR microorganisms and genetic materials., Becker, Pierre, Bosschaerts M, Chaerle P, Daniel H-M, Hellemans A, Olbrechts A, Rigouts L, Wilmotte A, and Hendrickx Marijke , Appl Environ Microbiol, 2019 Aug 30, (2019)

Systemic antifungal drug use in Belgium-One of the biggest antifungal consumers in Europe., Goemaere, Berdieke, Lagrou Katrien, Spriet Isabel, Hendrickx Marijke, Vandael Eline, Becker Pierre, and Catry Boudewijn , Mycoses, 2019 Jun, Volume 62, Issue 6, (2019)

Black aspergilli: A remaining challenge in fungal taxonomy?, D'hooge, Elizabet, Becker Pierre, Stubbe Dirk, Normand Anne-Cécile, Piarroux Renaud, and Hendrickx Marijke , Med Mycol, 2018 Dec 11, (2018)

Clonal Spread of Candida glabrata Bloodstream Isolates and Fluconazole Resistance Affected by Prolonged Exposure: a 12-Year Single-Center Study in Belgium., Goemaere, Berdieke, Lagrou Katrien, Spriet Isabel, Hendrickx Marijke, and Becker Pierre , Antimicrob Agents Chemother, 2018 Aug, Volume 62, Issue 8, (2018)

Decision criteria for MALDI-TOF MS-based identification of filamentous fungi using commercial and in-house reference databases, Normand, A-C, Cassagne C, Gautier M., Becker Pierre, Ranque S., Hendrickx Marijke, and Piarroux R. , BMC Microbiology, 2017 Jan 31, Volume 17, Issue 1, (2017)

Increasing candidemia incidence from 2004 to 2015 with a shift in epidemiology in patients pre-exposed to antifungals., Goemaere, Berdieke, Becker Pierre, Van Wijngaerden Eric, Maertens Johan, Spriet Isabel, Hendrickx Marijke, and Lagrou Katrien , Mycoses, 2017 Oct 12, Number 7, (2017)

Validation of a New Web Application for Identification of Fungi by Use of Matrix-Assisted Laser Desorption Ionization?Time of Flight Mass Spectrometry, Normand, A. C., Becker Pierre, Gabriel F., Cassagne C., Accoceberry I., Gari-Toussaint M., Hasseine L., De Geyter D., Pierard D., Surmont I., et al. , Journal of Clinical Microbiology, Nov-09-2018, Volume 55, Issue 9, (2017)

Screening cyanobacteria to discover new antifungal compounds, Becker, Pierre, Wilmotte A., Szternfeld Philippe, Andjelkovic Mirjana, Anthonissen R., Verschaeve Luc, and Hendrickx Marijke , Departemental Retreat of the Mycology Department of the Pasteur Institute 2016, 29/6/2016, Issue Département de Mycologie de l'Institut Pasteur de Paris, Paris, (2016)

Identifying fungal strains by MALDI-TOF MS: examples of applications, Becker, Pierre, Packeu Ann, Martiny D., De Bel A., Ranque S., Piarroux R., and Hendrickx Marijke , 7th Trends in Medical Mycology, 0/0/2015, Issue EORTC,  ESCMID, NA, (2015)

A modern tool for a conservative purpose: the use of MALDI-TOF MS in a fungal culture collection, Becker, Pierre, Stubbe Dirk, Claessens J., Roesems S., Bastin Y, Planard Chantal, Cassagne C, Piarroux R., and Hendrickx Marijke , First departemental retreat Department of Mycology of the Institut Pasteur, 0/0/2015, Issue d'Enfert,C, (2015)

New developments in the BCCM/IHEM fungal strains collection, Becker, Pierre, Stubbe Dirk, Goemaere Berdieke, Triest David, and Hendrickx Marijke , International Scientific Symposium of the Institut Pasteur International Network, 0/0/2015, Issue Institut Pasteur, NA, (2015)

Quality control in culture collections: confirming identity of filamentous fungi by MALDI-TOF MS, Becker, Pierre, Stubbe Dirk, Claessens J., Roesems S., Bastin Y., Planard Chantal, Cassagne C, Piarroux R., and Hendrickx Marijke , Mycoscience, 0/5/2015, Volume 56, Number 279, p.273 - 279, (2015)

Trends in candidaemia and antifungal consumption in Belgium, Goemaere, Berdieke, Becker Pierre, Ingenbleek A, Catry Boudewijn, Hendrickx Marijke, and Lagrou K. , 7th Trends in Medical Mycology, 0/0/2015, Issue EORTC,  ECMM, NA, (2015)

Identification of filamentous fungi isolates by MALDI-TOF mass spectrometry: clinical evaluation of an extended reference spectra library., Becker, Pierre, de Bel Annelies, Martiny Delphine, Ranque Stéphane, Piarroux Renaud, Cassagne C, Detandt Monique, and Hendrickx Marijke , Med Mycol, 2014 Nov, Volume 52, Issue 8, p.826-34, (2014)

MALDI-TOF mass spectrometry: revolutionising clinical laboratory diagnosis of mould infections, Gautier, M., Ranque S., Normand A-C, Becker Pierre, Packeu Ann, Cassagne C, L'ollivier C., Hendrickx Marijke, and Piarroux R. , Clin.Microbiol.Infect., 15/12/2014, Volume 20, Issue 12, Number 1371, p.1366 - 1371, (2014)