Search results - 29 results
Persistence of the Staphylococcus aureus epidemic European fusidic acid-resistant impetigo clone (EEFIC) in Belgium.
Volume 78, Issue 8 (2023) Keywords: Anti-Bacterial Agents Belgium Clone Cells Drug Resistance, Bacterial Fusidic Acid Humans Impetigo Methicillin-Resistant Staphylococcus aureus Multilocus Sequence Typing ...
Comparison of 6 DNA extraction methods for isolation of high yield of high molecular weight DNA suitable for shotgun metagenomics Nanopore sequencing to detect bacteriaAbstractBackgroundResultsConclusion
sequencing, of almost all the bacterial species present in a complex mock community. Conclusion: Amongst the 6 tested methods, the Quick- DNA HMW MagBead Kit (Zymo Research) was considered as the most suitable ...
Report on an initial assessment of long-read sequencing for metagenome (community and AMR) analysis (defined community, spiked and real simple and complex matrices) and comparison to current short-read standard
URL: https://doi.org/10.5281/zenodo.7429361 Keywords: Antimicrobial resistance Bacterial community Long read metagenomics Metagenome Health Topics: Health and disease monitoring Food consumption and ...
Genomic epidemiology of persistently circulating MDR Shigella sonnei strains associated with men who have sex with men (MSM) in Belgium (2013–19)
than isolates from women. Multiple co-circulating MDR S. sonnei clusters of different genotypes were identified in the MSM community. Further studies on risk groups are needed for targeted prevention, ...
Shotgun metagenomics as a ONE Health tool for better protecting human health
extraction to data analysis) for sensitive metagenomics, by analyzing various materials collected in food-producing environments, and spiked with defined mock communities, composed of different bacterial ...
A Bioinformatics Whole-Genome Sequencing Workflow for Clinical Mycobacterium tuberculosis Complex Isolate Analysis, Validated Using a Reference Collection Extensively Characterized with Conventional Methods and In Silico Approaches
single nucleotide polymorphism VALIDATION whole genome sequencing Abstract: The use of whole genome sequencing (WGS) for routine typing of bacterial isolates has increased substantially in recent years. ...
Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study.
species, present in a microbial community, which has up until now not been demonstrated for this application. The current work shows the feasibility of strain-level metagenomics of enriched food matrix ...
The burden of legionnaires' disease in Belgium, 2013 to 2017.
Mahieu; Piérard, D; Charlotte Michel; Stéphanie Jacquinet Source: Arch Public Health, Volume 78 (2020) Abstract: Background: Legionnaires’ disease (LD) is a severe bacterial infection causing pneumonia. ...
The burden of legionnaires’ disease in Belgium, 2013 to 2017
Legionnaires' Disease Abstract: Background Legionnaires’ disease (LD) is a severe bacterial infection causing pneumonia. Surveillance commonly underestimates the true incidence as not all cases are laboratory ...
Targeting the 16S rRNA gene for bacterial identification in complex mixed samples: comparative evaluation of second (Illumina) and third (Oxford Nanopore Technologies) generation sequencing technologies.
Keersmaecker; Kevin Vanneste Source: Int J Mol Sci, Volume 21, Issue 1 (2019) Keywords: bacteria DNA, Bacterial High-Throughput Nucleotide Sequencing Nanopores RNA, Ribosomal, 16S Abstract: Rapid, accurate ...