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Application of a strain-level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak
conventional analysis based on isolation, serotyping and MLVA (multilocus variable number tandem repeat analysis) comparison, followed by whole-genome sequencing, to confirm the source of the contamination over ...
Phylogeography of Human and Animal Strains: Genetic Fingerprinting of Q Fever in Belgium.
reservoirs. To determine the relationship between animal and human strains, Multiple Locus Variable-number Tandem Repeat Analysis (MLVA) (n=146), Single-Nucleotide Polymorphism (SNP) (n=92) and Whole Genome ...
A cluster of multidrug-resistant Mycobacterium tuberculosis among patients arriving in Europe from the Horn of Africa: a molecular epidemiological study.
multidrug-resistant tuberculosis. In this molecular epidemiological study, we prospectively defined outbreak cases with 24-locus mycobacterial interspersed repetitive unit-variable number tandem repeat (MIRU- VNTR) ...
Multi-laboratory validation study of multilocus variable-number tandem repeat analysis (MLVA) for Salmonella enterica serovar Enteritidis, 2015.
Multilocus Sequence Typing Phylogeny Predictive Value of Tests Public Health Surveillance Reproducibility of Results Salmonella enteritidis Salmonella Food Poisoning Salmonella Infections Tandem Repeat ...
Microbiological, clinical and molecular findings of non-typhoidal Salmonella bloodstream infections associated with malaria, Oriental Province, Democratic Republic of the Congo.
Resistance, Multiple, Bacterial Female Hospitalization Humans Infant Infant, Newborn Malaria Malaria, Falciparum Male Salmonella enteritidis Salmonella Infections Salmonella typhimurium Serogroup Tandem Repeat ...
Whole Genome Sequence Analysis of Salmonella Enteritidis PT4 Outbreaks from a National Reference Laboratory's Viewpoint.
investigated epidemiologically with a standard questionnaire and with serotyping, phage typing, multiple-locus variable-number of tandem repeats analysis (MLVA) and antimicrobial susceptibility testing as ...
Extensive genetic variability linked to IS26 insertions in the fljB promoter region of atypical monophasic variants of Salmonella enterica serovar Typhimurium.
Typhimurium isolates was genetically heterogeneous, as revealed by multilocus variable-number tandem-repeat analysis (MLVA), PCR, and sequencing. Pigs and pork represented a major source of such monophasic ...
Molecular typing of monophasic Salmonella 4,[5]:i:- strains isolated in Belgium (2008-2011).
typhimurium Tandem Repeat Sequences Abstract: To assess the distribution of Salmonella 4,[5]:i:- subtypes in the Belgian food chain and compare it to the subtypes associated with human infections, a molecular ...
Proof-of-concept study for successful inter-laboratory comparison of MLVA results
Practice Guidelines as Topic present profile Profiles result results Salmonella Salmonella enterica Salmonella typhimurium SB- IM serum Size SIZES standards strain study successful Tandem Repeat Sequences ...
Comparison of multiple typing methods for Aspergillus fumigatus36847
methods microbiology Microsatellite Repeats Multilocus Sequence Typing Multiple Mycological Typing Techniques ON Patient patients pattern present prevention protein Proteins random Reproducibility of ...