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2022
Development, evaluation and optimization of next generation sequencing data analysis tools in support of a fast response for public health and food chain safety, Saltykova, Assia , 10/06/2022, Ghent, Belgium, p.308, (2022)
Shotgun metagenomics as a ONE Health tool for better protecting human health, Gand, Mathieu, Buytaers Florence E., Bloemen Bram, Saltykova Assia, Denayer Sarah, Verhaegen Bavo, Mattheus Wesley, Piérard Denis, Bogaerts Bert, Marchal Kathleen, et al. , EFSA One, 21/06/2022, Issue EFSA, (2022)
2021
Application of a strain-level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak, Buytaers, Florence E., Saltykova Assia, Mattheus Wesley, Verhaegen Bavo, Roosens Nancy, Vanneste Kevin, Laisnez Valeska, Hammami Naïma, Pochet Brigitte, Cantaert Vera, et al. , Microbial Genomics, Jul-04-2021, Volume 7, Issue 4, (2021)
Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies, Buytaers, Florence E., Saltykova Assia, Denayer Sarah, Verhaegen Bavo, Vanneste Kevin, Roosens Nancy, Piérard Denis, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , Frontiers in Microbiology, May-11-2021, Volume 12, (2021)
2020
Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus, Berbers, Bas, Saltykova Assia, Garcia-Graells Cristina, Philipp Patrick, Arella Fabrice, Marchal Kathleen, Winand Raf, Vanneste Kevin, Roosens Nancy, and De Keersmaecker Sigrid C. J. , Scientific Reports, Jan-12-2020, Volume 10, Issue 1, (2020)
A Practical Method to Implement Strain-Level Metagenomics-Based Foodborne Outbreak Investigation and Source Tracking in Routine., Buytaers, Florence E., Saltykova Assia, Denayer Sarah, Verhaegen Bavo, Vanneste Kevin, Roosens Nancy, Piérard Denis, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , Microorganisms, 2020 Aug 05, Volume 8, Issue 8, (2020)
Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study., Saltykova, Assia, Buytaers Florence E., Denayer Sarah, Verhaegen Bavo, Piérard Denis, Roosens Nancy, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , Int J Mol Sci, 2020 Aug 08, Volume 21, Issue 16, (2020)
2019
Development of a real-time PCR method for the genoserotyping of Salmonella Paratyphi B variant Java., Gand, Mathieu, Mattheus Wesley, Saltykova Assia, Roosens Nancy, Dierick Katelijne, Marchal Kathleen, De Keersmaecker Sigrid C. J., and Bertrand Sophie , Appl Microbiol Biotechnol, 2019 Jun, Volume 103, Issue 12, (2019)
MinION sequencing technology to characterize unauthorized GM petunia plants circulating on the European Union market, Fraiture, Marie-Alice, Ujhelyi Gabriella, Ovesna Jaroslava, Van Geel D., De Keersmaecker Sigrid C. J., Saltykova Assia, Papazova N., and Roosens Nancy , Scientific reports, Volume 9, Issue 7141, (2019)
2018
Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:., Saltykova, Assia, Wuyts Véronique, Mattheus Wesley, Bertrand Sophie, Roosens Nancy, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , PLoS One, 2018, Volume 13, Issue 2, (2018)
A multiplex oligonucleotide ligation-PCR method using the Luminex technology for the geno-serotyping of the most common Salmonella in Belgium, Gand, Mathieu, Mattheus Wesley, Saltykova Assia, Roosens Nancy, Dierick Katelijne, Marchal Kathleen, De Keersmaecker Sigrid C. J., and Bertrand Sophie , ECCMID, 2018, Madrid, Spain, (2018)
Nanopore sequencing technology: a new route for the fast detection of unauthorized GMO., Fraiture, Marie-Alice, Saltykova Assia, De Keersmaecker Sigrid C. J., and Roosens Nancy , Sci Rep, 2018 May 21, Volume 8, Issue 1, (2018)
2017
Development of a real-time PCR test for the geno-serotyping of Salmonella Paratyphi B and its variant Java, Gand, Mathieu, Mattheus Wesley, Saltykova Assia, Roosens Nancy, Dierick Katelijne, Marchal Kathleen, De Keersmaecker Sigrid C. J., and Bertrand Sophie , BSFM conference, 2017, Brussels, Belgium, (2017)
2016
Data analysis associated with the use of whole genome sequencing for subtyping of pathogenic microorganisms, Salmonella Typhimurium as a case study, Saltykova, Assia, Wuyts V., Bertrand Sophie, Roosens Nancy, Marchal K., and De Keersmaecker Sigrid C. J. , Applied Bioinformatics in Life Sciences, 17/3/2016, Issue VIB, NA, (2016)

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