Search results - 8 results
Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods
Publication Type: Peer reviewed scientific article Authors: Bert Bogaerts; Stéphanie Nouws; Bavo Verhaegen; Sarah Denayer; Julien Van Braekel; Raf Winand; Qiang Fu; Florence Crombé; Denis Piérard; ...
Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study.
Publication Type: Peer reviewed scientific article Authors: Assia Saltykova; Florence E Buytaers; Sarah Denayer; Bavo Verhaegen; Piérard, Denis; Nancy Roosens; Marchal, Kathleen; Sigrid C.J. De ...
A Practical Method to Implement Strain-Level Metagenomics-Based Foodborne Outbreak Investigation and Source Tracking in Routine.
Publication Type: Peer reviewed scientific article Authors: Florence E Buytaers; Assia Saltykova; Sarah Denayer; Bavo Verhaegen; Kevin Vanneste; Nancy Roosens; Piérard, Denis; Marchal, Kathleen; ...
The Benefits of Whole Genome Sequencing for Foodborne Outbreak Investigation from the Perspective of a National Reference Laboratory in a Smaller Country.
genotypes. Besides a universal, all-in-one workflow with less hands-on-time (five versus seven actual working days for WGS versus conventional), WGS-based cgMLST-typing demonstrated increased resolution. This ...
Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates
DOI: https://doi.org/10.1038/s41598-020-71207-3 File: Version: Published Full text access: Public Access Full text language: English Category: A1 FOS Classification: 2.11 Other engineering and ...
Global and regional source attribution of Shiga toxin-producing Escherichia coli infections using analysis of outbreak surveillance data
Publication Type: Peer reviewed scientific article Authors: Sara M. Pires; Shannon Majowicz; Alexander Gill; Brecht Devleesschauwer Source: Epidemiology and Infection, Volume 147 (2019) Health ...
Associating sporadic, foodborne illness caused by Shiga toxin-producing Escherichia coli with specific foods: a systematic review and meta-analysis of case-control studies
Publication Type: Peer reviewed scientific article Authors: Brecht Devleesschauwer; Sara Monteiro Pires; Ian Young; Alex Gill; Shannon E Majowicz; the study team Source: Epidemiology and Infection, ...
Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates.
C.J. De Keersmaecker Source: Sci Rep, Volume 10, Issue 1 (2020) Keywords: NGS pathogenic E. coli STEC WGS Abstract: Whole genome sequencing (WGS) has proven to be the ultimate tool for bacterial isolate ...