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A bioinformatics WGS workflow for clinical complex isolate analysis, validated using a reference collection extensively characterized with conventional methods and approaches.

Keersmaecker; Nancy Roosens; Marchal, Kathleen; Vanessa Mathys; Vanneste, Kevin Source: J Clin Microbiol (2021) Abstract: The use of whole genome sequencing (WGS) for routine typing of bacterial isolates has ...

Infoblad meningokokkeninfecties 2020 (T4)

Health Topics:  Meningitis Méningite Meningitis Service:  Maladies bactériennes Bacteriële ziekten Bacterial diseases Manuscript versions:  File:  Version:  Published Full text access:  Public Access Full ...

Outbreak of Central American born Shigella sonnei in two youth camps in Belgium in the summer of 2019

Foodborne pathogens Maladies bactériennes Bacteriële ziekten Bacterial diseases Manuscript versions:  DOI:  https://doi.org/10.1007/s10096-021-04164-y File:  Version:  Published Full text access:  Public ...

Genomic epidemiology of emerging ESBL-producing Kentucky in Europe.

which further spread has occurred. Comparative genomics indicated that the gene is present on the bacterial chromosome, within the type VI secretion system region. The gene is integrated downstream of the ...

Impact of COVID-19 pandemic on tuberculosis laboratory services in Europe.

bactériennes Bacteriële ziekten Bacterial diseases Manuscript versions:  DOI:  https://doi.org/10.1183/13993003.03890-2020 Version:  Published Full text access:  Public Access Full text language:  English ...

A genoserotyping system for a fast and objective identification of Salmonella serotypes commonly isolated from poultry and pork food sectors in Belgium.

Service:  Maladies bactériennes Bacteriële ziekten Bacterial diseases Activités transversales en génomique appliquée Transversale activiteiten in toegepaste genomica Transversal activities in applied genomics ...

Deep amplicon sequencing for culture-free prediction of susceptibility or resistance to 13 anti-tuberculous drugs.

requires culture. Here, we evaluated the Deeplex Myc- TB targeted deep sequencing assay for prediction of resistance to 13 anti-tuberculous drugs/drug classes, directly applicable on sputum. With MTBC DNA ...

Development of an NGS-Based Workflow for Improved Monitoring of Circulating Plasmids in Support of Risk Assessment of Antimicrobial Resistance Gene Dissemination.

localized on plasmids can be easily transferred between bacterial isolates by horizontal gene transfer, thereby contributing to the spread of AMR. Next-generation sequencing (NGS) technologies are ideal for ...

A Practical Method to Implement Strain-Level Metagenomics-Based Foodborne Outbreak Investigation and Source Tracking in Routine.

chain reactions (qPCRs) are used in routine. In recent years, the use of whole genome sequencing (WGS) of bacterial isolates has proven its value to collect relevant information for strain ...

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