Search results - 597 results
The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics
collections Cyanobacteria Genomics Gloeobacterales Metagenomics nextflow phylogenomics Phylogeny Singularity containers Workflow Abstract: Background: Microbial culture collections play a key role in taxonomy ...
Using a combination of short- and long-read sequencing to investigate the diversity in plasmid- and chromosomally encoded extended-spectrum beta-lactamases (ESBLs) in clinical Shigella and Salmonella isolates in Belgium
Microbial Genomics, Volume 9, Issue 1 (2023) Health Topics: Health and disease monitoring Surveillance de la santé et des maladies Ziekten en gezondheid in kaart brengen Service: Maladies bactériennes ...
Immunovirological and environmental screening reveals actionable risk factors for fatal COVID-19 during post-vaccination nursing home outbreaksAbstract
Genomics Belgium consortium; Wattiez, Ruddy; Michael Peeters *; Bakelants, Kate; Denayer, Sarah; François Dufrasne *; Meex, Cécile; Gillet, Laurent; Artesi, Maria; Hayette, Marie-Pierre; Bontems, Sébastien; ...
Retrospective surveillance of viable Bacillus cereus group contaminations in commercial food and feed vitamin B2 products sold on the Belgian market using whole-genome sequencing
Kevin Vanneste Source: Frontiers in Microbiology, Volume 14 (2023) Keywords: Bacillus cereus Food Additives riboflavin Surveillance whole-genome sequencing Abstract: Bacillus cereus is a spore-forming ...
Complete genome reconstruction of the global and European regional dispersal history of the lumpy skin disease virus.
circulation of vaccine-like recombinants, and the use of vaccines. The slow molecular evolution of its DNA genome limits the utility of genetic variation for accurate tracing based on evolutionary analyses, but ...
Complete genome reconstruction of the global and European regional dispersal history of the lumpy skin disease virus.
circulation of vaccine-like recombinants, and the use of vaccines. The slow molecular evolution of its DNA genome limits the utility of genetic variation for accurate tracing based on evolutionary analyses, but ...
Strain-level characterization without culture enrichment? Easing and accelerating outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling
adaptive sampling, following whole genome amplification to increase the amount of genetic material to meet sequencing standards. The strain-level data analysis was performed as previously described (Buytaers ...
Genomic monitoring of SARS-CoV-2 variants using sentinel SARI hospital surveillance.
Issue 10 (2023) Keywords: COVID-19 Genomics hospitals Humans Pandemics Pneumonia SARS-CoV-2 Sentinel Surveillance Abstract: BACKGROUND: To support the COVID-19 pandemic response, many countries, including ...
RNA sequencing of avian paramyxovirus (Paramyxoviridae, Avulavirinae) isolates from wild mallards in Belgium, 2021: complete genomes and coinfections.
RNA sequencing to characterize three Avulavirinae isolates from pooled samples obtained from wild mallards in Belgium in 2021. The complete genome sequences of two avian Orthoavulavirus-1 (AOAV-1) ...
Whole-Genome Sequencing-Based Screening of MRSA in Patients and Healthcare Workers in Public Hospitals in Benin.
Staphylococcus aureus whole-genome sequencing. Abstract: Methicillin-resistant (MRSA) constitutes a serious public health concern, with a considerable impact on patients’ health, and substantial healthcare costs. ...