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Strain-level characterization without culture enrichment? Easing and accelerating outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling
Publication Type: Scientific poster, presentation or proceeding Authors: Florence E Buytaers; Bavo Verhaegen; Tom Van Nieuwenhuysen; Nancy Roosens; Kevin Vanneste; Kathleen Marchal; Sigrid C.J. De ...
Shotgun metagenomics as a ONE Health tool for better protecting human health
Piérard; Bert Bogaerts; Kathleen Marchal; The FARMED consortium; Nancy Roosens; Kevin Vanneste; Sigrid C.J. De Keersmaecker Source: EFSA One, Issue EFSA (2022) Abstract: Introduction: Open approaches to ...
Application of a strain-level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak
Pochet, Brigitte; Vera Cantaert; Marchal, Kathleen; Sarah Denayer; Sigrid C.J. De Keersmaecker Source: Microbial Genomics, Volume 7, Issue 4 (2021) Keywords: food surveillance Metagenomics outbreak ...
A shotgun metagenomics approach to detect and characterize unauthorized genetically modified microorganisms in microbial fermentation products
Publication Type: Peer reviewed scientific article Authors: Florence E Buytaers; Marie-Alice Fraiture; Bas Berbers; Els Vandermassen; Stefan Hoffman; N. Papazova; Kevin Vanneste; Marchal, Kathleen ...
A genoserotyping system for a fast and objective identification of Salmonella serotypes commonly isolated from poultry and pork food sectors in Belgium.
Publication Type: Peer reviewed scientific article Authors: Mathieu Gand; Wesley Mattheus; Nancy Roosens; Katelijne Dierick; Marchal, Kathleen; Sophie Bertrand; Sigrid C.J. De Keersmaecker Source: ...
Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:.
Publication Type: Peer reviewed scientific article Authors: Assia Saltykova; Wuyts, Véronique; Wesley Mattheus; Sophie Bertrand; Nancy Roosens; Marchal, Kathleen; Sigrid C.J. De Keersmaecker Source: ...
Molecular Subtyping of Salmonella Typhimurium with Multiplex Oligonucleotide Ligation-PCR (MOL-PCR).
Publication Type: Peer reviewed scientific article Authors: Wuyts, Véronique; Wesley Mattheus; Nancy Roosens; Marchal, Kathleen; Sophie Bertrand; Sigrid C.J. De Keersmaecker Source: Methods Mol ...
Guidelines for optimisation of a multiplex oligonucleotide ligation-PCR for characterisation of microbial pathogens in a microsphere suspension array.
Publication Type: Peer reviewed scientific article Authors: Wuyts, Véronique; Nancy Roosens; Sophie Bertrand; Marchal, Kathleen; Sigrid C.J. De Keersmaecker Source: Biomed Res Int, Volume 2015, ...
MLVA as a tool for public health surveillance of human Salmonella Typhimurium: prospective study in Belgium and evaluation of MLVA loci stability.
Publication Type: Peer reviewed scientific article Authors: Wuyts, Véronique; Wesley Mattheus; Guillaume De Laminne de Bex; Wildemauwe, Christa; Nancy Roosens; Marchal, Kathleen; Sigrid C.J. De ...