Search results - 9 results
Development of strain-level shotgun metagenomics approaches to detect and characterize microbiological contaminants in the context of food safety
Safety microbiological contaminants shotgun metagenomics Abstract: Foodborne contaminations are a global burden on public health worldwide. For many years, and until recently, the microbial contaminants ...
Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillanceAbstract
Publication Type: Peer reviewed scientific article Authors: Bram Bloemen; Mathieu Gand; Kevin Vanneste; Marchal, Kathleen; Nancy Roosens; Sigrid C.J. De Keersmaecker Source: Scientific Reports, Volume 13, Issue 1 (2023) Health Topics: Health and environm ...
Comparison of 6 DNA extraction methods for isolation of high yield of high molecular weight DNA suitable for shotgun metagenomics Nanopore sequencing to detect bacteriaAbstractBackgroundResultsConclusion
Keywords: DNA extraction HMW DNA Long-read Metagenomics Method evaluation nanopore Abstract: Background: Oxford Nanopore Technologies (ONT) offers an accessible platform for long-read sequencing, which ...
Report on an initial assessment of long-read sequencing for metagenome (community and AMR) analysis (defined community, spiked and real simple and complex matrices) and comparison to current short-read standard
URL: https://doi.org/10.5281/zenodo.7429361 Keywords: Antimicrobial resistance Bacterial community Long read metagenomics Metagenome Health Topics: Health and disease monitoring Food consumption and ...
Report on the feasibility of using Hi-C sequencing for metagenomics to define the context of AMR genes
https://zenodo.org/record/7433351#.Y7aj4HbMKM8 Keywords: Antimicrobial resistance Hi-C metagenomics Health Topics: Antimicrobial resistance (AMR) Food consumption and food safety Animal health Health and environment Résistance aux ...
Optimised long-read sequence bioinformatics tool for the analysis of the resistome and microbial communities
https://doi.org/10.5281/zenodo.7433258 Keywords: Antimicrobial resistance bioinformatics Long read metagenomic sequencing Microbial community Resistome Health Topics: Antimicrobial resistance (AMR) Food consumption and food safety ...
Report on initial findings of on-site diagnostic tests and IT solutions for human clinical, veterinary and environmental samples for early warning of emerging resistant pathogens
https://doi.org/10.5281/zenodo.7433281 URL: https://doi.org/10.5281/zenodo.7433281 Keywords: Long read metagenomics Metagenome On-site metagenomics Health Topics: Antimicrobial resistance (AMR) Food consumption and food safety Animal ...
Review on current scientific literature and overview of commercially available methods for on-site DNA isolation
https://doi.org/10.5281/zenodo.4724557 Keywords: AMR Antimicrobial resistance DNA isolation literature review metagenomic On-site Health Topics: Health and disease monitoring Food consumption and food safety Animal health Health and ...
Towards population genomics and metagenomics in agriculture and marine environments
Ruttink, Tom Source: BIG N2N annual symposium, Gent, Belgium (2015) Keywords: Towards population genomics and metagenomics in agriculture and marine environments Health Topics: Health and environment Santé ...