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Use of a Whole Genome Sequencing-based approach for Mycobacterium tuberculosis surveillance in Europe in 2017-2019: an ECDC pilot study.
including both core genome multilocus sequence typing (cgMLST), and single nucleotide polymorphism (SNP)-based calculation of distances on all WGS data that fulfilled minimum quality criteria to ensure data ...
Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center: as a Proof-of-Concept.
employed typing schemas (including, among others, core genome multilocus sequence typing), and serogroup determination. We analyzed a core validation dataset of 67 well-characterized samples typed by means ...
Molecular epidemiology and antimicrobial resistance mechanisms of Campylobacter coli from diarrhoeal patients and broiler carcasses in Belgium.
multilocus sequence typing (MLST), porA typing, flagellin gene A restriction fragment length polymorphism (flaA- RFLP) typing, and by PCR binary typing (P- BIT). Thirty-two MLST sequence types, 24 flaA types ...
Fusarium, clinical relevance and mass spectrometry methods for identification, using strains of the Belgian fungal culture collection BCCM/IHEM
isolated from patients, were re-identified by multilocus DNA marker sequencing and phylogeny. The remaining 289 validated strains, comprising 40 different species, were of great value: (i) Analysis of the ...
Multi-laboratory validation study of multilocus variable-number tandem repeat analysis (MLVA) for Salmonella enterica serovar Enteritidis, 2015.
Multilocus Sequence Typing Phylogeny Predictive Value of Tests Public Health Surveillance Reproducibility of Results Salmonella enteritidis Salmonella Food Poisoning Salmonella Infections Tandem Repeat ...
OXA-48 Producing Klebsiella pneumoniae in a Household Contact of a Previously Infected Patient: Person-to-Person Transmission or Coincidental Community Acquisition?
might acquire this bacterium from another family member who lived in the same house. The two isolates, although different by pulsed-field gel electrophoresis and multilocus sequence typing, carried ...
Changes in Meningococcal Strains in the Era of a Serogroup C Vaccination Campaign: Trends and Evolution in Belgium during the Period 1997-2012.
(2015) Keywords: ADOLESCENT Adult Belgium Biological Evolution Child Child, Preschool DNA, Bacterial Female Humans Infant Male Meningococcal Infections Meningococcal Vaccines Multilocus Sequence Typing ...
Extensive genetic variability linked to IS26 insertions in the fljB promoter region of atypical monophasic variants of Salmonella enterica serovar Typhimurium.
Typhimurium isolates was genetically heterogeneous, as revealed by multilocus variable-number tandem-repeat analysis (MLVA), PCR, and sequencing. Pigs and pork represented a major source of such monophasic ...
Detection of a geographical and endemic cluster of hyper-invasive meningococcal strains.
Evolution, Molecular Female Genome, Bacterial Geography Humans Infant Male Meningococcal Infections Microbial Sensitivity Tests middle aged Multilocus Sequence Typing Neisseria meningitidis, Serogroup ...
Trends in production of extended-spectrum beta-lactamases among Enterobacteriaceae of clinical interest: results of a nationwide survey in Belgian hospitals.
Tests middle aged Molecular Epidemiology Molecular Typing Multilocus Sequence Typing Young adult Abstract: OBJECTIVES: to assess the frequency and diversity of extended-spectrum β-lactamases (ESBL s) in ...