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Molecular and virological characterization of the first poultry outbreaks of Genotype VII.2 velogenic avian orthoavulavirus type 1 (NDV) in North-West Europe, BeNeLux, 2018.

Newcastle Disease Newcastle disease virus Phylogeny Poultry Poultry Diseases Abstract: After two decades free of Newcastle disease, Belgium encountered a velogenic avian orthoavulavirus type 1 epizootic in ...

Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies

related human isolate of the affected patient, by means of a single-nucleotide polymorphism (SNP)-based phylogeny. The inferred strain harbored the same virulence genes as the spiked isolate and could be ...

Genomic epidemiology of emerging ESBL-producing Kentucky in Europe.

present urinary-tract infections. Bayesian time-scaled phylogeny on whole genome sequences of isolates from these cases and supplementary isolates from public sequence databases was used to infer the origin ...

Complex Circulation of Foot-and-Mouth Disease Virus in Cattle in Nigeria.

De Clercq Source: Front Vet Sci, Volume 7 (2020) Keywords: foot-and-mouth disease (FMD) Foot-and-Mouth Disease Virus Nigeria Phylogeny topotypes. VP1 Abstract: Nigeria is a large densely populated ...

Phylogenetic Analysis of Belgian Small Ruminant Lentiviruses Supports Cross Species Virus Transmission and Identifies New Subtype B5 Strains.

current SRLV phylogeny revealed that many subtypes have been defined over the years based on limited sequence information. To keep phylogeny as a useful tool, we advocate to apply more rigorous sequencing ...

Updating the Taxonomy of Dermatophytes of the BCCM/IHEM Collection According to the New Standard: A Phylogenetic Approach.

Dermatophyten Dermatophytes ITS phylogenetics Phylogeny Taxonomy Tubulin Abstract: Recent taxonomical revisions based on multilocus gene sequencing have provided some clarifications to dermatophyte ...

Black aspergilli: A remaining challenge in fungal taxonomy?

Keywords: antifungal susceptibility Aspergillus sect. Nigri MALDI-TOF MS Phylogeny Abstract: Aspergillus section Nigri is a taxonomically difficult but medically and economically important group. In this ...

Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:.

PLoS One, Volume 13, Issue 2 (2018) Keywords: bacterial phylogeny; food-borne; genes; NGS; WGS; computational biology/bioinformatics; disease outbreaks; outbreak; performance evaluation; pipeline; ...

Complete coding sequence of a novel picorna-like virus in a blackbird infected with Usutu virus.

Volume 163, Issue 6 (2018) Keywords: Animals Belgium Bird Diseases Chromosome Mapping Coinfection Flavivirus Flavivirus Infections Genome, Viral Open Reading Frames Passeriformes Phylogeny Picornaviridae ...

Fusarium, clinical relevance and mass spectrometry methods for identification, using strains of the Belgian fungal culture collection BCCM/IHEM

isolated from patients, were re-identified by multilocus DNA marker sequencing and phylogeny. The remaining 289 validated strains, comprising 40 different species, were of great value: (i) Analysis of the ...

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