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Development of a genoserotyping system for the identification of Salmonella serotypes
Paratyphi B var. Java where only one suitable marker could be retrieved among more than 3 million Single Nucleotide Polymorphism (SNP) positions obtained from a genomic comparison. This valuable SNP marker ...
Data analysis associated with the use of whole genome sequencing for subtyping of pathogenic microorganisms, Salmonella Typhimurium as a case study
identification of a link between the origin of an infection and the human isolate in case of outbreak situations.Here, we have explored the possibilities offered by single nucleotide polymorphism (SNP)-based ...
A multiplex oligonucleotide ligation-PCR as a complementary tool for subtyping of Salmonella Typhimurium
genomic island 1 (SGI1), allantoinase gene allB, MLVA locus STTR10, antibiotic resistance genes, single nucleotide polymorphisms (SNP s) and phase 2 flagellar gene fljB. The in vitro stability of these ...