Search results - 185 results

Targeted Whole Genome Sequencing of the Capripoxvirus Genome from Clinical Tissue Samples and Lyophilized Vaccine Batches.

achieved by whole-genome sequencing. In this chapter, we describe a robust, cost-effective, and widely applicable protocol for reconstructing (nearly) complete CaPV genomes directly from clinical samples or ...

Complete genome reconstruction of the global and European regional dispersal history of the lumpy skin disease virus.

this limitation has not yet been formally assessed. Furthermore, until present, whole genome sequencing in affected areas has remained patchy. This study combines the first fine-grained sampling of LSDV ...

Complete genome reconstruction of the global and European regional dispersal history of the lumpy skin disease virus.

this limitation has not yet been formally assessed. Furthermore, until present, whole genome sequencing in affected areas has remained patchy. This study combines the first fine-grained sampling of LSDV ...

RNA sequencing of avian paramyxovirus (Paramyxoviridae, Avulavirinae) isolates from wild mallards in Belgium, 2021: complete genomes and coinfections.

Issue 5 (2023) Keywords: Animals Avulavirus Belgium Coinfection Ducks Influenza in Birds Newcastle disease virus Paramyxoviridae Phylogeny Poultry Rna Sequence Analysis, RNA Abstract: We used untargeted ...

Lumpy Skin Disease Virus Genome Sequence Analysis: Putative Spatio-Temporal Epidemiology, Single Gene versus Whole Genome Phylogeny and Genomic Evolution.

a whole-genome-sequence (WGS)-based phylogeny and compared it with single-gene-based phylogenies. To study population and spatiotemporal patterns in greater detail, we reconstructed networks. We determined that there are ...

Hemorrhagic bowel syndrome in dairy cattle: Gross, histological, and microbiological characterization.

sequencing showed a polymicrobial population at the hematoma and unaffected intestine, with mostly mild presence of at selective culture. Gross and microscopic lesions, as well as the culture and sequencing ...

Report on an initial assessment of long-read sequencing for metagenome (community and AMR) analysis (defined community, spiked and real simple and complex matrices) and comparison to current short-read standard

Publication Type: Sci. report, recommendat°, guidance doc., directive, monograph Authors: Sigrid C.J. De Keersmaecker; Mathieu Gand; Indre Navickaite; Josephine Gruetzke; Lee-Julia Bartsch; Saria Otani; Giuliano Garofolo; Marco Di Domenico; Valeria Michel ...

Report on the feasibility of using Hi-C sequencing for metagenomics to define the context of AMR genes

Publication Type: Sci. report, recommendat°, guidance doc., directive, monograph Authors: Sigrid C.J. De Keersmaecker; Josephine Grützke; Carlus Deneke; Jennie Fischer; Lee Julia Bartsch; Bram Bloemen; Kevin Vanneste; Jolien D'aes; Nancy Roosens; Man ...

Optimised long-read sequence bioinformatics tool for the analysis of the resistome and microbial communities

https://doi.org/10.5281/zenodo.7433258 Keywords: Antimicrobial resistance bioinformatics Long read metagenomic sequencing Microbial community Resistome Health Topics:  Antimicrobial resistance (AMR) Food consumption and food safety ...

First Belgian Report of Ertapenem Resistance in an ST11 Klebsiella Pneumoniae Strain Isolated from a Dog Carrying blaSCO-1 and blaDHA-1 Combined with Permeability Defects

Antibiotics, Volume 11, Issue 9 (2022) Keywords: antimicrobial resistance (AMR) carbapenem companion animal emerging risk hybrid sequencing Klebsiella pneumoniae OmpK37 Sepsis sequence type 11 Abstract: ...

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