Search results - 83 results
Retrospective surveillance of viable Bacillus cereus group contaminations in commercial food and feed vitamin B2 products sold on the Belgian market using whole-genome sequencing
Publication Type: Peer reviewed scientific article Authors: Bert Bogaerts; Marie-Alice Fraiture; Tom Van Nieuwenhuysen; Bram Jacobs; Koenraad Van Hoorde; Sigrid C.J. De Keersmaecker; Nancy Roosens ...
Towards facilitated interpretation of shotgun metagenomics long-read sequencing data analyzed with KMA for the detection of bacterial pathogens and their antimicrobial resistance genes
Michelacci, Valeria; Matamoros, Bosco Rodríguez; González-Zorn, Bruno; Brouwer, Michael S. M.; Di Marcantonio, Lisa; Bloemen, Bram; Vanneste, Kevin; Roosens, Nancy H. C. J.; AbuOun, Manal; De Keersmaecker, ...
Strain-level characterization without culture enrichment? Easing and accelerating outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling
Publication Type: Scientific poster, presentation or proceeding Authors: Florence E Buytaers; Bavo Verhaegen; Tom Van Nieuwenhuysen; Nancy Roosens; Kevin Vanneste; Kathleen Marchal; Sigrid C.J. De ...
Comparison of 6 DNA extraction methods for isolation of high yield of high molecular weight DNA suitable for shotgun metagenomics Nanopore sequencing to detect bacteriaAbstractBackgroundResultsConclusion
Publication Type: Peer reviewed scientific article Authors: Mathieu Gand; Bram Bloemen; Kevin Vanneste; Nancy Roosens; Sigrid C.J. De Keersmaecker Source: BMC Genomics, Volume 24, Issue 1 (2023) ...
Development of a Taxon-Specific Real-Time Polymerase Chain Reaction Method to Detect Trichoderma reesei Contaminations in Fermentation Products
Publication Type: Peer reviewed scientific article Authors: Fraiture, Marie-Alice; Gobbo, Andrea; N. Papazova; Roosens, Nancy H. C. Source: Fermentation, Volume 9, Issue 11 (2023) Health Topics: ...
Targeted High-Throughput Sequencing Enables the Detection of Single Nucleotide Variations in CRISPR/Cas9 Gene-Edited Organisms
Sigrid C.J. De Keersmaecker; Kevin Vanneste; Nancy Roosens Source: Foods, Volume 12, Issue 3 (2023) Keywords: CRISPR/Cas9 detection food and feed chain Genetically modified organism high-throughput ...
Report on an initial assessment of long-read sequencing for metagenome (community and AMR) analysis (defined community, spiked and real simple and complex matrices) and comparison to current short-read standard
Otani; Giuliano Garofolo; Marco Di Domenico; Valeria Michelacci; Bosco R Matamoros; Carlus Deneke; Lisa Di Marcantonio; Francesca Marotta; Jennie Fischer; Bram Bloemen; Kevin Vanneste; Nancy Roosens ...
Report on the feasibility of using Hi-C sequencing for metagenomics to define the context of AMR genes
Bloemen; Kevin Vanneste; Jolien D'aes; Nancy Roosens; Manal AbuOun Source: OpenAIRE, Zenodo, p.10 (2022) Accession Number: https://zenodo.org/record/7433351#.Y7aj4HbMKM8 URL: ...
Optimised long-read sequence bioinformatics tool for the analysis of the resistome and microbial communities
Bosco Rodríguez Matamoros; Nancy Roosens; Sigrid C.J. De Keersmaecker Source: OpenAIRE, Zenodo, p.12 (2022) Accession Number: https://doi.org/10.5281/zenodo.7433258 URL: ...
Report on initial findings of on-site diagnostic tests and IT solutions for human clinical, veterinary and environmental samples for early warning of emerging resistant pathogens
Mathieu Gand; Nancy Roosens; Kevin Vanneste; Sigrid C.J. De Keersmaecker; Quillan Dijkstra; Saria Otani; Michael Brouwer Source: OpenAIRE, Zenodo, p.12 (2022) Accession Number: ...