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Development, evaluation and optimization of next generation sequencing data analysis tools in support of a fast response for public health and food chain safety
unauthorized GMO WGS-based subtyping Health Topics: Health and disease monitoring Surveillance de la santé et des maladies Ziekten en gezondheid in kaart brengen Food consumption and food safety Consommation et ...
Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:.
Salmonella; Salmonella enterica; Salmonella typhimurium; SNP; subtyping; whole genome sequencing Abstract: Whole genome sequencing represents a promising new technology for subtyping of bacterial pathogens. ...
Data analysis associated with the use of whole genome sequencing for subtyping of pathogenic microorganisms, Salmonella Typhimurium as a case study
result results routine Salmonella Salmonella enterica Salmonella typhimurium Science situation SOCIAL Species Still study Subtyping subtyping of isolates Surveillance use WGS whole genome whole genome ...
A multiplex oligonucleotide ligation-PCR as a complementary tool for subtyping of Salmonella Typhimurium
resistance result results S Salmonella Salmonella enterica Salmonella typhimurium stability Subtyping Surveillance Technique Type use VALIDATION Abstract: Subtyping below the serovar level is essential for ...
Evaluation of whole genome sequencing for routine subtyping of Salmonella Typhimurium for surveillance and outbreak investigation
Phenotype resistance routine S Salmonella Salmonella enterica Salmonella typhimurium Shigella situation Species study Subtyping Surveillance Technique technology whole genome whole genome sequencing Abstract: ...
Molecular subtyping of Salmonella Typhimurium combining different types of markers in a multiplex liquid bead suspension array
Design detection disease Diseases Foodborne Diseases gene Genes Genome identification identify International IS Luminex method molecular subtyping Multiplex assay ON outbreak Phage type profile resistance ...
Design of multiplex assays for molecular subtyping of pathogens with the Luminex xMAP technology
IT limitation Limitations Luminex microorganism microorganisms Molecular molecular subtyping Multiplex assay Oligonucleotides outbreak outbreaks pathogen reducing regulation Sample SOFTWARE specificity ...