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Whole-Genome Sequence Approach and Phylogenomic Stratification Improve the Association Analysis of Mutations With Patient Data in Influenza Surveillance

Publication Type: Peer reviewed scientific article Authors: Van Poelvoorde, Laura; Vanneste, Kevin; De Keersmaecker, Sigrid; Thomas, Isabelle; Van Goethem, Nina; Van Gucht, Steven; Saelens, Xavier; ...

Large diversity of linezolid-resistant isolates discovered in food-producing animals through linezolid selective monitoring in Belgium in 2019

Publication Type: Peer reviewed scientific article Authors: Timmermans, Michaël; Bogaerts, Bert; Vanneste, Kevin; Sigrid De Keersmaecker; Nancy Roosens; Kowalewicz, Carole; Simon, Guillaume; ...

Whole-Genome Sequence Approach and Phylogenomic Stratification Improve the Association Analysis of Mutations With Patient Data in Influenza Surveillance.

Publication Type: Peer reviewed scientific article Authors: Laura, Van; Kevin, Vanneste; De Keersmaecker, Sigrid; Thomas, Isabelle; Nina, Van; Van Gucht, Steven; Saelens, Xavier; Roosens, Nancy ...

Strategy and Performance Evaluation of Low-Frequency Variant Calling for SARS-CoV-2 Using Targeted Deep Illumina Sequencing

Vanneste, Kevin Source: Frontiers in Microbiology, Volume 12 (2021) Keywords: co-infection Illumina NGS quasispecies SARS-CoV-2 variant of concern wastewater surveillance Abstract: The ongoing COVID-19 ...

Retrospective evaluation of routine whole genome sequencing of Mycobacterium tuberculosis at the Belgian National Reference Center, 2019.

Publication Type: Peer reviewed scientific article Authors: Soetaert, Karine; Ceyssens, Pieter-Jan; Boarbi, Samira; Bogaerts, Bert; Delcourt, Thomas; Vanneste, Kevin; De Keersmaecker, Sigrid; ...

Large diversity of linezolid-resistant isolates discovered in food-producing animals through linezolid selective monitoring in Belgium in 2019.

Publication Type: Peer reviewed scientific article Authors: Timmermans, Michaël; Bogaerts, Bert; Kevin Vanneste *; De Keersmaecker, S C J *; Nancy Roosens *; Kowalewicz, Carole; Simon, Guillaume; ...

Application of a strain-level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak

Publication Type: Peer reviewed scientific article Authors: Buytaers, Florence; Assia Saltykova; Mattheus, Wesley; Verhaegen, Bavo; Roosens, Nancy; Vanneste, Kevin; Laisnez, Valeska; Hammami, Naïma; ...

Case Report: Multidrug Resistant Raoultella ornithinolytica in a Septicemic Calf

Publication Type: Peer reviewed scientific article Authors: Pas, Mathilde; Vanneste, Kevin; Jade, Bokma; Van Driessche, Laura; De Keersmaecker, Sigrid; Roosens, Nancy; Haesebrouck, Freddy; Boyen, ...

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