Search results - 13 results
Using a combination of short- and long-read sequencing to investigate the diversity in plasmid- and chromosomally encoded extended-spectrum beta-lactamases (ESBLs) in clinical Shigella and Salmonella isolates in Belgium
Publication Type: Peer reviewed scientific article Authors: Berbers, Bas; Vanneste, Kevin; Roosens, Nancy H. C. J.; Marchal, Kathleen; Pieter-Jan Ceyssens *; De Keersmaecker, Sigrid C. J. Source: ...
Report on an initial assessment of long-read sequencing for metagenome (community and AMR) analysis (defined community, spiked and real simple and complex matrices) and comparison to current short-read standard
Otani; Giuliano Garofolo; Marco Di Domenico; Valeria Michelacci; Bosco R Matamoros; Carlus Deneke; Lisa Di Marcantonio; Francesca Marotta; Jennie Fischer; Bram Bloemen; Kevin Vanneste; Nancy Roosens; ...
Whole-Genome Sequence Approach and Phylogenomic Stratification Improve the Association Analysis of Mutations With Patient Data in Influenza Surveillance.
Publication Type: Peer reviewed scientific article Authors: Laura Van Poelvoorde; Kevin Vanneste; Sigrid C.J. De Keersmaecker; Isabelle Thomas; Nina Van Goethem; Steven Van Gucht; Saelens, Xavier; ...
Whole-Genome Sequencing-Based Antimicrobial Resistance Characterization and Phylogenomic Investigation of 19 Multidrug-Resistant and Extended-Spectrum Beta-Lactamase-Positive Escherichia coli Strains Collected From Hospital Patients in Benin in 2019.
Dissou; Simon, Anne; Francis Moise Dossou; Kevin Vanneste; Olivia Dalleur Source: Front Microbiol, Volume 12 (2021) Abstract: The increasing worldwide prevalence of extended-spectrum beta-lactamase (ESBL) ...
Key considerations for the implementation of high throughput sequencing based metagenomics (mNGS) in diagnostic clinical, food and veterinary labs: a no-nonsense pointer. the Metastava consortium
Publication Type: Sci. report, recommendat°, guidance doc., directive, monograph Authors: Steven Van Borm; Frank Vandenbussche; Kris De Clercq; Andy Haegeman; Sigrid C.J. De Keersmaecker; Kevin ...
First detection of a plasmid-encoded New-Delhi metallo-beta-lactamase-1 (NDM-1) producing Acinetobacter baumannii using whole genome sequencing, isolated in a clinical setting in Benin.
Publication Type: Peer reviewed scientific article Authors: Carine Yehouenou; Bert Bogaerts; Kevin Vanneste; Nancy Roosens; Sigrid C.J. De Keersmaecker; Marchal, Kathleen; Affolabi, Dissou; Reza ...
Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center: as a Proof-of-Concept.
Keersmaecker; Nancy Roosens; Kevin Vanneste Source: Front Microbiol, Volume 10 (2019) Keywords: national reference center Neisseria meningitidis public health VALIDATION whole-genome sequencing Abstract: Despite ...
Application of whole genome data for in silico evaluation of primers and probes routinely employed for the detection of viral species by RT-qPCR using dengue virus as a case study.
Publication Type: Peer reviewed scientific article Authors: Kevin Vanneste; Linda Garlant; Sylvia Broeders; Steven Van Gucht; Nancy Roosens Source: BMC Bioinformatics, Volume 19, Issue 1 (2018) ...
Development and implementation of a transversal NGS & bioinformatics platform at the Belgian Institute of Public Health: deployment of user-friendly pipelines for routine use
Publication Type: Scientific poster, presentation or proceeding Authors: Kevin Vanneste; Q. Fu; Bert Bogaerts; Raf Winand; Romeu,A.G.; Brown,I.; Julien Van Braekel; Sigrid C.J. De Keersmaecker; ...
Development and implementation of a transversal NGS & bioinformatics platform at the Belgian Institute of Public Health
Publication Type: Scientific poster, presentation or proceeding Authors: Kevin Vanneste; Bert Bogaerts; Q. Fu; Raf Winand; Romeu,A.G.; Brown,I.; Sigrid C.J. De Keersmaecker; Nancy Roosens Source: ...