Search results - 86 results
A Bioinformatics Whole-Genome Sequencing Workflow for Clinical Mycobacterium tuberculosis Complex Isolate Analysis, Validated Using a Reference Collection Extensively Characterized with Conventional Methods and In Silico Approaches
Keersmaecker; Nancy Roosens; Marchal, Kathleen; Vanessa Mathys; Kevin Vanneste Source: J Clin Microbiol (2021) Keywords: Antimicrobial resistance Mycobacterium tuberculosis national reference center public health ...
Whole Genome Sequencing Provides an Added Value to the Investigation of Staphylococcal Food Poisoning Outbreaks
Publication Type: Peer reviewed scientific article Authors: Stéphanie Nouws; Bert Bogaerts; Bavo Verhaegen; Sarah Denayer; Lasse Laeremans; Kathleen Marchal; Nancy Roosens; Kevin Vanneste; Sigrid ...
Evaluation of the added value of viral genomic information for predicting severity of influenza infection
Devleesschauwer; Isabelle Thomas; Kevin Vanneste; Nancy Roosens; Herman Van Oyen Source: BMC Infectious Diseases, Volume 21, Issue 1 (2021) Health Topics: Flu Griep Grippe Acute respiratory tract infection Acute ...
Concentrations and distribution of chlorinated paraffins in Belgian foods
Publication Type: Peer reviewed scientific article Authors: Thomas J. McGrath; Franck Limonier; Poma, Giulia; Jasper Bombeke; Raf Winand; Kevin Vanneste; Mirjana Andjelkovic; Els Van Hoeck; Laure ...
A shotgun metagenomics approach to detect and characterize unauthorized genetically modified microorganisms in microbial fermentation products
Publication Type: Peer reviewed scientific article Authors: Florence E Buytaers; Marie-Alice Fraiture; Bas Berbers; Els Vandermassen; Stefan Hoffman; N. Papazova; Kevin Vanneste; Marchal, Kathleen; ...
First detection of a plasmid-encoded New-Delhi metallo-beta-lactamase-1 (NDM-1) producing Acinetobacter baumannii using whole genome sequencing, isolated in a clinical setting in Benin.
Publication Type: Peer reviewed scientific article Authors: Carine Yehouenou; Bert Bogaerts; Kevin Vanneste; Nancy Roosens; Sigrid C.J. De Keersmaecker; Marchal, Kathleen; Affolabi, Dissou; Reza ...
Deepening of In Silico Evaluation of SARS-CoV-2 Detection RT-qPCR Assays in the Context of New Variants
Publication Type: Peer reviewed scientific article Authors: Mathieu Gand; Kevin Vanneste; Isabelle Thomas; Steven Van Gucht; Arnaud Capron; Philippe Herman; Nancy Roosens; Sigrid C.J. De ...
Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods
Kathleen Marchal; Nancy Roosens; Sigrid C.J. De Keersmaecker; Kevin Vanneste Source: Microbial Genomics, Volume 7, Issue 3 (2021) Abstract: Whole genome sequencing (WGS) enables complete characterization of ...
Development of an NGS-Based Workflow for Improved Monitoring of Circulating Plasmids in Support of Risk Assessment of Antimicrobial Resistance Gene Dissemination.
Publication Type: Peer reviewed scientific article Authors: Bas Berbers; Pieter-Jan Ceyssens; Bogaerts, Pierre; Kevin Vanneste; Nancy Roosens; Marchal, Kathleen; Sigrid C.J. De Keersmaecker Source: ...
A Practical Method to Implement Strain-Level Metagenomics-Based Foodborne Outbreak Investigation and Source Tracking in Routine.
Publication Type: Peer reviewed scientific article Authors: Florence E Buytaers; Assia Saltykova; Sarah Denayer; Bavo Verhaegen; Kevin Vanneste; Nancy Roosens; Piérard, Denis; Marchal, Kathleen; ...