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Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe.

Organization priority. We previously developed a software tool,, which provided offline species identification and drug resistance predictions for from whole genome sequencing (WGS) data. Performance was ...

Detailed Evaluation of Data Analysis Tools for Subtyping of Bacterial Isolates Based on Whole Genome Sequencing: as a Proof of Concept.

the detailed comparison of WGS-based subtyping workflows and evaluation of their suitability for the organism and the research context in question. We evaluated the performance of pipelines used for ...

Complete Genome Sequence of the Lumpy Skin Disease Virus Isolated from the First Reported Case in Greece in 2015

Serafeim C.; Dovas, Chrysostomos I.; Steven Van Borm; Chondrokouki, Eleni D.; Kris De Clercq Source: Genome Announcements, Volume 5, Issue 29 (2017) Keywords: Illumina LSDV Lumpy skin disease NGS WGS Health ...

Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:.

PLoS One, Volume 13, Issue 2 (2018) Keywords: bacterial phylogeny; food-borne; genes; NGS; WGS; computational biology/bioinformatics; disease outbreaks; outbreak; performance evaluation; pipeline; ...

Complete Genome Sequences of the Neethling-Like Lumpy Skin Disease Virus Strains Obtained Directly from Three Commercial Live Attenuated Vaccines

Van Borm; Kris De Clercq Source: Genome Announcements, Volume 4, Issue 6 (2016) Keywords: capripoxviridae long-range PCR Lumpy skin disease NGS pacbio sequencing SMRT WGS Health Topics:  Animal health ...

Correction for Mathijs et al., Complete Genome Sequences of the Neethling-Like Lumpy Skin Disease Virus Strains Obtained Directly from Three Commercial Live Attenuated Vaccines

Van Borm; Kris De Clercq Source: Genome Announcements, Volume 5, Issue 6 (2017) Keywords: LSDV Lumpy skin disease NGS PacBio WGS Health Topics:  Animal health Santé animale Diergezondheid Manuscript ...

Survey on the Use of Whole-Genome Sequencing for Infectious Diseases Surveillance: Rapid Expansion of European National Capacities, 2015-2016.

Volume 5 (2017) Keywords: infectious disease sequencing Surveillance whole genome Abstract: Whole-genome sequencing (WGS) has become an essential tool for public health surveillance and molecular ...

Global transcriptional analyses of Mycobacterium tuberculosis using old and new drugs

(480 000 new cases), impeding the treatment of infected patients. Current TB drug resistance research is mainly focused on the genomic level, using WGS to search for resistance-causing mutations. ...

Global transcriptional analyses of Mycobacterium tuberculosis using old and new drugs

treatment of infected patients. Current TB drug resistance research is mainly focused on the genomic level, using WGS to search for resistance-causing mutations. However, transcriptional analyses can be ...

Guest lecture molecular- microbial techniques: the use of whole genome sequencing (WGS) for typing of bacterial pathogenic isolates

UGent, NA (2016) Keywords: Genome M Molecular next generation sequencing pathogenic Technique typing use WGS whole genome whole genome sequencing Health Topics:  Health and disease monitoring Surveillance ...

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