Search results - 63 results

Strategies to detect unauthorized genetically modified organisms in food and feed chain

GMO in alimentary matrices using exclusively the NGS technology, through a whole genome sequencing (WGS) approach, was also investigated. As this last approach does not theoretically require any prior ...

Data analysis associated with the use of whole genome sequencing for subtyping of pathogenic microorganisms, Salmonella Typhimurium as a case study

result results routine Salmonella Salmonella enterica Salmonella typhimurium Science situation SOCIAL Species Still study Subtyping subtyping of isolates Surveillance use WGS whole genome whole genome ...

User-friendly WGS analysis of Salmonella Enteritidis PT4 outbreaks

Keersmaecker Source: (2015) Keywords: analysi analysis conference food Food Microbiology microbiology ON outbreak outbreaks Salmonella Salmonella enteritidis WGS whole genome sequencing Category:  Peer-reviewed ...

Whole Genome Sequence Analysis of Salmonella Enteritidis PT4 Outbreaks from a National Reference Laboratory's Viewpoint.

Both the suspected food and human isolates being available, and this for both outbreaks, made these the ideal case study for a retrospective whole genome sequencing (WGS) analysis with the goal to ...

Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates.

Keersmaecker, S C J * Source: Sci Rep, Volume 10, Issue 1 (2020) Keywords: NGS pathogenic E. coli STEC WGS Abstract: Whole genome sequencing (WGS) has proven to be the ultimate tool for bacterial isolate ...

Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations.

Publication Type: Peer reviewed scientific article Authors: Bogaerts, Bert; Winand, Raf; Van Braekel, Julien; Hoffman, Stefan; Roosens, Nancy; De Keersmaecker, Sigrid; Marchal, Kathleen; Vanneste, Kevin Source: Microb Genom, Volume 7, Issue 11 (2021) Manu ...

Status and potential of bacterial genomics for public health practice: a scoping review

of whole-genome sequencing (WGS) data for (1) source tracing, (2) early outbreak detection, (3) unraveling transmission dynamics, (4) monitoring drug resistance, (5) detecting cross-border transmission ...

Integrative transnational analysis to dissect tuberculosis transmission events along the migratory route from Africa to Europe.

sequencing (WGS) analysis. Data were compared with those from collections from other European countries receiving migrants from the HA and a strain-specific PCR was applied for a fast searching of common ...

Whole-genome-based phylogenomic analysis of the Belgian 2016-2017 influenza A(H3N2) outbreak season allows improved surveillance.

technologies enable a shift to whole-genome sequencing (WGS) for influenza surveillance, but this requires laboratory workflow adaptations and advanced bioinformatics workflows. In this study, 253 influenza ...

The key role of WGS-based surveillance of Listeria monocytogenes in both human and food isolates in outbreak investigations

Publication Type: Scientific poster, presentation or proceeding Authors: An Van den Bossche; Sigrid De Keersmaecker; Wesley Mattheus; Nancy Roosens; Bert Bogaerts; Kevin Vanneste; Koenraad Van Hoorde; Bavo Verhaegen Source: 26th Conference on Food Microbi ...

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