Search results - 16 results
Development, evaluation and optimization of next generation sequencing data analysis tools in support of a fast response for public health and food chain safety
Publication Type: Dissertation Authors: Assia Saltykova Source: Ghent University, Ghent, Belgium, p.308 (2022) Keywords: bioinformatics tools Database GMO Metagenomics NGS outbreak investigation ...
NAuRA: Genomic Tool to Identify Staphylococcal Enterotoxins in Strains Responsible for FoodBorne Outbreaks.
Hristo Daskalov; Michel-Yves Mistou; Jacques-Antoine Hennekinne Source: Front Microbiol, Volume 11 (2020) Keywords: bioinformatics tool; gene detection genomic staphylococcal enterotoxins genes variant ...
Perceived utility and feasibility of pathogen genomics for public health practice: a survey among public health professionals working in the field of infectious diseases, Belgium, 2019
receiving further training. Main concerns were related to the cost of sequencing technologies, data sharing, data integration, interdisciplinary working, and bioinformatics expertise. Conclusions Belgian ...
Listeria surveillance in Belgium
evolution in molecular typing, the NRC completely switched to Whole-Genome-Sequencing (WGS) for cluster detection. Therefore, an in-house Galaxy-based bio-informatic pipeline was developed. For the strain ...
Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center: as a Proof-of-Concept.
bioinformatics resources and/or expertise. Moreover, many national reference laboratories and centers, as well as other laboratories working under a quality system, require extensive validation to demonstrate that ...
Application of whole genome data for in silico evaluation of primers and probes routinely employed for the detection of viral species by RT-qPCR using dengue virus as a case study.
Publication Type: Peer reviewed scientific article Authors: Kevin Vanneste; Linda Garlant; Sylvia Broeders; Steven Van Gucht; Nancy Roosens Source: BMC Bioinformatics, Volume 19, Issue 1 (2018) ...
Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:.
PLoS One, Volume 13, Issue 2 (2018) Keywords: bacterial phylogeny; food-borne; genes; NGS; WGS; computational biology/bioinformatics; disease outbreaks; outbreak; performance evaluation; pipeline; ...
Development of a bioinformatics pipeline for routine analysis of whole genome sequencing data for typing of Neisseria meningitidis
Publication Type: Scientific poster, presentation or proceeding Authors: Bert Bogaerts Source: Big Data in Biology and Health, NA, Issue EMBL, NA (2016) Keywords: a analysi analysis bioinformatics ...
Development and implementation of a transversal NGS & bioinformatics platform at the Belgian Institute of Public Health: deployment of user-friendly pipelines for routine use
Belgian bioinformatics Biology Computational Biology conference Development European Genomics health implementation Institute NGS ON public public health Public-health routine use WGS Health Topics: Health ...
Development and implementation of a transversal NGS & bioinformatics platform at the Belgian Institute of Public Health
Applied Bioinformatics in Life Sciences, NA, Issue VIB, NA (2016) Keywords: a acquisition an analysi analysis AS at Belgian bioinformatics Case challenge Clinical contribution Control criteria data Database ...