Search results - 7 results

Optimised long-read sequence bioinformatics tool for the analysis of the resistome and microbial communities

https://doi.org/10.5281/zenodo.7433258 Keywords: Antimicrobial resistance bioinformatics Long read metagenomic sequencing Microbial community Resistome Health Topics:  Antimicrobial resistance (AMR) Food consumption and food safety ...

Development, evaluation and optimization of next generation sequencing data analysis tools in support of a fast response for public health and food chain safety

Publication Type: Dissertation Authors: Assia Saltykova Source: Ghent University, Ghent, Belgium, p.308 (2022) Keywords: bioinformatics tools Database GMO Metagenomics NGS outbreak investigation ...

Development of a genoserotyping system for the identification of Salmonella serotypes

a number of 100 genomes used for comparisons) and bioinformatics tools such as Gegenees and BioNumerics. This marker selection was particularly complex for the detection of the heterogeneous population of S. ...

Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:.

PLoS One, Volume 13, Issue 2 (2018) Keywords: bacterial phylogeny; food-borne; genes; NGS; WGS; computational biology/bioinformatics; disease outbreaks; outbreak; performance evaluation; pipeline; ...

Data analysis associated with the use of whole genome sequencing for subtyping of pathogenic microorganisms, Salmonella Typhimurium as a case study

Bioinformatics in Life Sciences, NA, Issue VIB, NA (2016) Keywords: a an analysi analysis application approach approaches AS at bioinformatics Case case studies Case study case-study Comparison continue Cost data ...

Statistical framework for detection of Genetically Modified Organisms based on Next Generation Sequencing

Nieuwerburgh, Filip; Nancy Roosens Source: Food Chemistry, Volume 192, Issue 1, Number 798 (2016) Keywords: bioinformatics detection GM rice GMO NGS Processed food Statistical framework Abstract: Because the ...

NeXSplorer.iph: Development of next generation sequencing data analysis tools in support of a fast response for public health and food chain safety

analysis application applications bioinformatics data Development food Food Chain GMO health NGS public public health Public-health Health Topics:  Food consumption and food safety Consommation et sécurité ...

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