Search results - 49 results

Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:.

PLoS One, Volume 13, Issue 2 (2018) Keywords: bacterial phylogeny; food-borne; genes; NGS; WGS; computational biology/bioinformatics; disease outbreaks; outbreak; performance evaluation; pipeline; ...

Survey on the Use of Whole-Genome Sequencing for Infectious Diseases Surveillance: Rapid Expansion of European National Capacities, 2015-2016.

of funding, staff, and expertise. Illumina technology was the most frequently used followed by Ion Torrent technology. The access to bioinformatics expertise and competence for routine WGS data ...

Inter-laboratory study of human in vitro toxicogenomics-based tests as alternative methods for evaluating chemical carcinogenicity: a bioinformatics perspective.

the developed bioinformatics workflows deliver accurate measures for inter-laboratory comparison studies, and the study can be used as guidance for validation of future carcinogenicity assays in order ...

Development of a bioinformatics pipeline for routine analysis of whole genome sequencing data for typing of Neisseria meningitidis

Publication Type: Scientific poster, presentation or proceeding Authors: Bert Bogaerts Source: Big Data in Biology and Health, NA, Issue EMBL, NA (2016) Keywords: a analysi analysis bioinformatics ...

Development and implementation of a transversal NGS & bioinformatics platform at the Belgian Institute of Public Health: deployment of user-friendly pipelines for routine use

Belgian bioinformatics Biology Computational Biology conference Development European Genomics health implementation Institute NGS ON public public health Public-health routine use WGS Health Topics:  Health ...

Development and implementation of a transversal NGS & bioinformatics platform at the Belgian Institute of Public Health

Applied Bioinformatics in Life Sciences, NA, Issue VIB, NA (2016) Keywords: a acquisition an analysi analysis AS at Belgian bioinformatics Case challenge Clinical contribution Control criteria data Database ...

Data analysis associated with the use of whole genome sequencing for subtyping of pathogenic microorganisms, Salmonella Typhimurium as a case study

Bioinformatics in Life Sciences, NA, Issue VIB, NA (2016) Keywords: a an analysi analysis application approach approaches AS at bioinformatics Case case studies Case study case-study Comparison continue Cost data ...

Experimental detection of short regulatory motifs in eukaryotic proteins: tips for good practice as well as for bad.

the iceberg” has been exposed. Experimental and bioinformatic motif discovery remain challenging and error prone. The advice presented in this article is aimed at helping researchers to uncover genuine ...

Use of next generation sequencing data to develop a qPCR method for specific detection of EU-unauthorized genetically modified Bacillus subtilis overproducing riboflavin.

sequence information. However, NGS data analysis often requires appropriate tools, involving bioinformatics expertise which is not alwayspresent in the average enforcement laboratory. This hampers the use of ...

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