Search results - 16 results

Genomic Insights into Methicillin-Resistant Staphylococcus aureus spa type t899 Isolates Belonging to Different Sequence Types

Publication Type: Peer reviewed scientific article Authors: Tegegne, Henok Ayalew; Ivana Koláčková; Martina Florianová; P Wattiau; Tereza Gelbíčová; Cécile Boland; Jean-Yves Madec; Marisa Haenni; Renata Karpíšková Source: Applied and Environmental Microbi ...

Report on the feasibility of using Hi-C sequencing for metagenomics to define the context of AMR genes

Activités transversales en génomique appliquée Transversale activiteiten in toegepaste genomica Transversal activities in applied genomics Manuscript versions:  DOI:  https://doi.org/10.5281/zenodo.7433351 ...

Optimised long-read sequence bioinformatics tool for the analysis of the resistome and microbial communities

Santé et environnement Gezondheid en milieu Service:  Activités transversales en génomique appliquée Transversale activiteiten in toegepaste genomica Transversal activities in applied genomics Manuscript ...

Report on initial findings of on-site diagnostic tests and IT solutions for human clinical, veterinary and environmental samples for early warning of emerging resistant pathogens

et environnement Gezondheid en milieu Service:  Activités transversales en génomique appliquée Transversale activiteiten in toegepaste genomica Transversal activities in applied genomics Manuscript ...

Genomic epidemiology of emerging ESBL-producing Kentucky in Europe.

Ceyssens; Maria Louise Borg; Marie Chattaway; Jacquelyn McCormick; Timothy J Dallman; Eelco Franz Source: Emerg Microbes Infect, Volume 9, Issue 1 (2020) Keywords: ESBL Genomics Salmonella Kentucky Abstract: ...

Deep amplicon sequencing for culture-free prediction of susceptibility or resistance to 13 anti-tuberculous drugs.

J (2020) Abstract: Conventional molecular tests for detecting complex (MTBC) drug resistance on clinical samples cover a limited set of mutations. Whole genome sequencing (WGS) typically requires culture. ...

Development of an NGS-Based Workflow for Improved Monitoring of Circulating Plasmids in Support of Risk Assessment of Antimicrobial Resistance Gene Dissemination.

view of AMR gene localization, i.e., chromosomal or on a plasmid. Whole-genome and plasmid DNA extraction methods were compared, as were assemblies consisting of short reads (Illumina MiSeq), long reads ...

First detection of a plasmid located carbapenem resistant blaVIM-1 gene in E. coli isolated from meat products at retail in Belgium in 2015

Activités transversales en génomique appliquée Transversale activiteiten in toegepaste genomica Transversal activities in applied genomics Pathogènes alimentaires Voedselpathogenen Foodborne pathogens ...

Genome Sequences of Livestock-Associated Methicillin-Resistant Staphylococcus aureus spa Type t899 Strains Belonging to Three Different Sequence Types (ST398, ST9, and ST4034).

report, we present the draft genome sequences of nine LA- MRSA strains. These strains were isolated from meat and a human nasal swab sample and belong to one unique type (t899), but to three different ...

Comparative genomics of quinolone-resistant and susceptible Campylobacter jejuni of poultry origin from major poultry producing European countries (GENCAMP)

Frank M. Aarestrup Source: EFSA Supporting PublicationsEFSA Supporting PublicationsEFSA Supporting Publications, Volume 15, Issue 5 (2018) ISBN: 2397-8325 Keywords: Campylobacter Europe Genomics Poultry ...

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