Search results - 8 results

Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies

De Keersmaecker, Sigrid Source: Frontiers in Microbiology, Volume 12 (2021) Keywords: Flongle food surveillance Metagenomics nanopore outbreak SNP analysis STEC strain-level Abstract: The current ...

Development of an NGS-Based Workflow for Improved Monitoring of Circulating Plasmids in Support of Risk Assessment of Antimicrobial Resistance Gene Dissemination.

Sigrid Source: Antibiotics (Basel), Volume 9, Issue 8 (2020) Keywords: Antimicrobial resistance MinION Plasmid sequencing Abstract: Antimicrobial resistance (AMR) is one of the most prominent public health ...

Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe.

user-defined resistance catalogues, iii) improved identification of non-tuberculous mycobacterial species, and iv) an updated statistical model for Oxford Nanopore Technologies sequencing data. is released under ...

Nanopore sequencing technology: a new route for the fast detection of unauthorized GMO.

walking food and feed safety GMO GMO detection method method development nanopore sequencing Unauthorised GMO Abstract: In order to strengthen the current genetically modified organism (GMO) detection ...

Use of next‐generation sequencing in microbial risk assessment

assessment MinION MiSeq nanopore sequencing next generation sequencing Abstract: Despite the ever increase in rigorous control and monitoring measures to assure safe food along the entire farm‐to‐fork chain, ...

MinION sequencing technology to characterize unauthorized GM petunia plants circulating on the European Union market

Roosens, Nancy Source: Scientific reports, Volume 9, Issue 7141 (2019) Keywords: amplicon sequencing detection DNA walking GM petunia Oxford Nanopore Technologies Real-time PCR Abstract: In order to ...

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