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Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies
De Keersmaecker, Sigrid Source: Frontiers in Microbiology, Volume 12 (2021) Keywords: Flongle food surveillance Metagenomics nanopore outbreak SNP analysis STEC strain-level Abstract: The current ...
Development of an NGS-Based Workflow for Improved Monitoring of Circulating Plasmids in Support of Risk Assessment of Antimicrobial Resistance Gene Dissemination.
Sigrid Source: Antibiotics (Basel), Volume 9, Issue 8 (2020) Keywords: Antimicrobial resistance MinION Plasmid sequencing Abstract: Antimicrobial resistance (AMR) is one of the most prominent public health ...
Targeting the 16S rRNA gene for bacterial identification in complex mixed samples: comparative evaluation of second (Illumina) and third (Oxford Nanopore Technologies) generation sequencing technologies.
Keersmaecker, Sigrid; Vanneste, Kevin Source: Int J Mol Sci, Volume 21, Issue 1 (2019) Keywords: bacteria DNA, Bacterial High-Throughput Nucleotide Sequencing Nanopores RNA, Ribosomal, 16S Abstract: Rapid, ...
Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe.
user-defined resistance catalogues, iii) improved identification of non-tuberculous mycobacterial species, and iv) an updated statistical model for Oxford Nanopore Technologies sequencing data. is released under ...
Nanopore sequencing technology: a new route for the fast detection of unauthorized GMO.
walking food and feed safety GMO GMO detection method method development nanopore sequencing Unauthorised GMO Abstract: In order to strengthen the current genetically modified organism (GMO) detection ...
Use of next‐generation sequencing in microbial risk assessment
assessment MinION MiSeq nanopore sequencing next generation sequencing Abstract: Despite the ever increase in rigorous control and monitoring measures to assure safe food along the entire farm‐to‐fork chain, ...
ST131 fimH22 Escherichia coli isolate with a blaCMY-2/IncI1/ST12 plasmid obtained from a patient with bloodstream infection: highly similar to E. coli isolates of broiler origin.
coli from European collaborators. The plasmid from ESBL20160056 was sequenced using a MinION Mk1B (Oxford Nanopore Technologies). RESULTS: The E. coli isolate from the Danish patient clustered together ...
MinION sequencing technology to characterize unauthorized GM petunia plants circulating on the European Union market
Roosens, Nancy Source: Scientific reports, Volume 9, Issue 7141 (2019) Keywords: amplicon sequencing detection DNA walking GM petunia Oxford Nanopore Technologies Real-time PCR Abstract: In order to ...