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Development of strain-level shotgun metagenomics approaches to detect and characterize microbiological contaminants in the context of food safety
had only rarely been associated with human cases of an outbreak, let alone during a real outbreak. Therefore, this PhD centered on the development of shotgun metagenomics methods to study ...
Development, evaluation and optimization of next generation sequencing data analysis tools in support of a fast response for public health and food chain safety
Publication Type: Dissertation Authors: Assia Saltykova Source: Ghent University, Ghent, Belgium, p.308 (2022) Keywords: bioinformatics tools Database GMO Metagenomics NGS outbreak investigation ...
Development of a data-intensive centralized system for surveillance and outbreak investigation of bacterial pathogens using whole-genome sequencing
were optimized for time-critical situations such as outbreaks, where providing a quick response facilitates efficient public health intervention, thereby minimizing the clinical and economic impact. ...
Exploring the added value of Whole Genome Sequencing in routine and pandemic viral surveillance
vaccine and antiviral drug susceptibility of these circulating strains. WGS enables tracking viral outbreaks and estimating the virus spread in a given population, how fast the virus is mutating, as well as ...