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The origin of biased sequence depth in sequence-independent nucleic acid amplification and optimization for efficient massive parallel sequencing.
biased sequence depth when using random amplification. Avian paramyxovirus type 8 was used as a model RNA virus to investigate these mechanisms. We showed, based on in silico analysis of the sequence depth ...
What's in a strain? Viral metagenomics identifies genetic variation and contaminating circoviruses in laboratory isolates of pigeon paramyxovirus type 1.
used next generation sequencing on random amplified viral nucleic acids to determine the genome sequence of 11 pigeon paramyxovirus type 1 (PPMV-1) isolates from Belgium (period 1998-2011). The PPMV-1 ...
Genetic data from avian influenza and avian paramyxoviruses generated by the European network of excellence (EPIZONE) between 2006 and 2011--review and recommendations for surveillance.
group of the European “ EPIZONE ” network of excellence have been generating sequence data on avian influenza and avian paramyxoviruses from both European and African sources in an attempt to more fully ...
Identification and complete genome sequencing of paramyxoviruses in mallard ducks (Anas platyrhynchos) using random access amplification and next generation sequencing technologies.
BACKGROUND: During a wildlife screening program for avian influenza A viruses (AIV) and avian paramyxoviruses (APMV) in Belgium, we isolated two hemagglutinating agents from pools of cloacal swabs of wild ...
Electron tomography of negatively stained complex viruses: application in their diagnosis.
Publication Type: Peer reviewed scientific article Authors: Jan Mast; Demeestere, Lien Source: Diagn Pathol, Volume 4 (2009) Keywords: eletron tomography negative staining paramyxovirus Parapoxvirus ...
Quasispecies nature of an unusual avian paramyxovirus type-1 isolated from pigeons.
Newcastle Disease Newcastle disease virus Phosphoproteins Phylogeny RNA, Viral Sequence Analysis, DNA Sequence Homology, Nucleic Acid Viral Fusion Proteins virulence Abstract: An avian paramyxovirus type-1 ...
Molecular study of the quasispecies evolution of a typical pigeon paramyxovirus type 1 after serial passages in pigeons by contact.
nature of a typical pigeon paramyxovirus type 1 (pPMV-1) was, for the first time, studied under conditions close to the natural infectious environment. The virus was serially passaged in pigeons by ...
Molecular characterisation of three avian paramyxovirus type 1 isolated from pigeons in France.
Disease Outbreaks France Genes, Viral Molecular Sequence Data Newcastle Disease Newcastle disease virus Phylogeny RNA, Viral Sequence Homology, Amino Acid Viral Proteins Abstract: Three avian Paramyxovirus ...
Monitoring of pigeon paramyxovirus type-1 in organs of pigeons naturally infected with Salmonella Typhimurium.
Salmonella typhimurium Survival Rate Abstract: An experimental pigeon paramyxovirus (pPMV-1) infection was followed by reverse transcription-nested polymerase chain reaction for 31 days after infection, in 16 ...
Evolution of pigeon Newcastle disease virus strains.
isolates obtained during the years 1998 and 1999 from racing pigeons were shown to be antigenically indistinguishable from the pigeon paramyxovirus type 1 (PPMV-1) viruses isolated in the years 1983 and ...