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pathogens genome

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A bioinformatics WGS workflow for clinical complex isolate analysis, validated using a reference collection extensively characterized with conventional methods and approaches.

Keersmaecker; Nancy Roosens; Marchal, Kathleen; Vanessa Mathys; Vanneste, Kevin Source: J Clin Microbiol (2021) Abstract: The use of whole genome sequencing (WGS) for routine typing of bacterial isolates has ...

A genoserotyping system for a fast and objective identification of Salmonella serotypes commonly isolated from poultry and pork food sectors in Belgium.

poultry-derived food products. Therefore, a strict monitoring of Salmonella serotypes in food-producing animals is needed to limit the transmission of the pathogen to humans. Additionally, Salmonella can lead to ...

A Practical Method to Implement Strain-Level Metagenomics-Based Foodborne Outbreak Investigation and Source Tracking in Routine.

Kathleen; De Keersmaecker, S C J * Source: Microorganisms, Volume 8, Issue 8 (2020) Keywords: food surveillance Metagenomics outbreak SNP analysis STEC whole genome Abstract: The management of a foodborne ...

The Benefits of Whole Genome Sequencing for Foodborne Outbreak Investigation from the Perspective of a National Reference Laboratory in a Smaller Country.

WGS whole genome sequencing Abstract: Gradually, conventional methods for foodborne pathogen typing are replaced by whole genome sequencing (WGS). Despite studies describing the overall benefits, ...

Perceived utility and feasibility of pathogen genomics for public health practice: a survey among public health professionals working in the field of infectious diseases, Belgium, 2019

Devleesschauwer Source: BMC Public Health, Volume 20, Issue 1 (2020) Keywords: Next-generation sequencing pathogen genomics Public Health Practice survey whole-genome sequencing Abstract: Background Pathogen ...

Survey on the Use of Whole-Genome Sequencing for Infectious Diseases Surveillance: Rapid Expansion of European National Capacities, 2015-2016.

priorities. The sampling frame as well as bioinformatics analysis varied by pathogen/resistance issue and country. Core genome multilocus allelic profiling, also called cgMLST, was the most frequently used ...

Travel- and community-based transmission of multidrug-resistant Shigella sonnei lineage among international orthodox jewish communities

pathogen POPULATION risk S SB- IM Shigella Shigella sonnei Species Spread State States strain Transmission Travel trend trends United Kingdom United States United-kingdom whole genome Abstract: Shigellae are ...

Experimental evidence for proteins constituting virion components and particle morphogenesis of bacteriophage ZF40.

363, Issue 6 (2016) Keywords: Bacteriophages Capsid Proteins Gene Order Genome, Viral Open Reading Frames Proteome Viral Proteins Virion Abstract: Bacteriophage ZF40 is the only currently available, ...

Whole Genome Sequence Analysis of Salmonella Enteritidis PT4 Outbreaks from a National Reference Laboratory's Viewpoint.

Brussels Case case studies Case study case-study Common data Discussion disease Diseases electronic epidemiology expertise food foodborne outbreaks future gene Genetic genetics Genome genomic Genomics health ...

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