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Transforming Shiga toxin-producing surveillance through whole genome sequencing in food safety practices.
Abstract: INTRODUCTION: Shiga toxin-producing (STEC) is a gastrointestinal pathogen causing foodborne outbreaks. Whole Genome Sequencing (WGS) in STEC surveillance holds promise in outbreak prevention and ...
Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillanceAbstract
genomica Transversal activities in applied genomics Manuscript versions: DOI: https://sciensano.be/en/10.1038/s41598-023-46771-z File: Version: Published Full text access: Public Access Full text ...
Listeria monocytogenes isolates from Cornu aspersum snails: Whole genome-based characterization and host-pathogen interactions in a snail infection model.
Argyro; Alexandra Staikou; Antonios Zdragas; Minas Yiangou Source: Fish Shellfish Immunol, Volume 123 (2022) Keywords: Animals Host-Pathogen Interactions Listeria monocytogenes Listeriosis Meat whole genome ...
Molecular and virological characterization of the first poultry outbreaks of Genotype VII.2 velogenic avian orthoavulavirus type 1 (NDV) in North-West Europe, BeNeLux, 2018.
polybasic sequence of the fusion gene cleavage site and the intracerebral pathotyping assay demonstrated the high pathogenicity of the strain. This paper represents the first notification of this specific ...
Case Report: Multidrug Resistant Raoultella ornithinolytica in a Septicemic Calf
survival chances. Few studies have identified and characterized bacteria involved in sepsis in calves. This report demonstrates the involvement of a multidrug resistant, an emerging pathogen in human ...
Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies
routine laboratory practices to investigate food samples in case of foodborne outbreaks still rely on attempts to isolate the pathogen in order to characterize it. We present in this study a proof of ...
Phylogenomic Investigation of Increasing Fluoroquinolone Resistance among Belgian Cases of Shigellosis between 2013 and 2018 Indicates Both Travel-Related Imports and Domestic Circulation.
Vanneste; Pieter-Jan Ceyssens Source: Microorganisms, Volume 9, Issue 4 (2021) Abstract: Shigellosis is an acute enteric infection caused mainly by the species and. Since surveillance of these pathogens ...
A Bioinformatics Whole-Genome Sequencing Workflow for Clinical Mycobacterium tuberculosis Complex Isolate Analysis, Validated Using a Reference Collection Extensively Characterized with Conventional Methods and In Silico Approaches
confirmation and identification (16S, / RD,, Single Nucleotide Polymorphism (SNP)-based antimicrobial resistance (AMR) prediction, and pathogen typing (spoligotyping, SNP barcoding, and core genome MultiLocus ...
Development and evaluation of a core genome multilocus sequence typing scheme for Paenibacillus larvae, the deadly American foulbrood pathogen of honeybees
Publication Type: Peer reviewed scientific article Authors: Bertolotti, Alicia C.; Forsgren, Eva; Schäfer, Marc O.; EuroPLarva Consortium; Sircoulomb, Fabrice; Gaïani, Nicolas; Ribière‐Chabert, Magali; Paris, Laurianne; Lucas, Pierrick; de Boisséson, Clai ...
First detection of a plasmid-encoded New-Delhi metallo-beta-lactamase-1 (NDM-1) producing Acinetobacter baumannii using whole genome sequencing, isolated in a clinical setting in Benin.
beta-Lactamases Female Humans Plasmids whole genome sequencing Abstract: BACKGROUND: Carbapenem-resistant Acinetobacter baumannii is considered a top priority pathogen by the World Health Organization for ...