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Phylogenomic Investigation of Increasing Fluoroquinolone Resistance among Belgian Cases of Shigellosis between 2013 and 2018 Indicates Both Travel-Related Imports and Domestic Circulation.
Vanneste; Pieter-Jan Ceyssens Source: Microorganisms, Volume 9, Issue 4 (2021) Abstract: Shigellosis is an acute enteric infection caused mainly by the species and. Since surveillance of these pathogens ...
A Bioinformatics Whole-Genome Sequencing Workflow for Clinical Mycobacterium tuberculosis Complex Isolate Analysis, Validated Using a Reference Collection Extensively Characterized with Conventional Methods and In Silico Approaches
confirmation and identification (16S, / RD,, Single Nucleotide Polymorphism (SNP)-based antimicrobial resistance (AMR) prediction, and pathogen typing (spoligotyping, SNP barcoding, and core genome MultiLocus ...
Development and evaluation of a core genome multilocus sequence typing scheme for Paenibacillus larvae, the deadly American foulbrood pathogen of honeybees
Publication Type: Peer reviewed scientific article Authors: Bertolotti, Alicia C.; Forsgren, Eva; Schäfer, Marc O.; EuroPLarva Consortium; Sircoulomb, Fabrice; Gaïani, Nicolas; Ribière‐Chabert, Magali; Paris, Laurianne; Lucas, Pierrick; de Boisséson, Clai ...
First detection of a plasmid-encoded New-Delhi metallo-beta-lactamase-1 (NDM-1) producing Acinetobacter baumannii using whole genome sequencing, isolated in a clinical setting in Benin.
beta-Lactamases Female Humans Plasmids whole genome sequencing Abstract: BACKGROUND: Carbapenem-resistant Acinetobacter baumannii is considered a top priority pathogen by the World Health Organization for ...
A genoserotyping system for a fast and objective identification of Salmonella serotypes commonly isolated from poultry and pork food sectors in Belgium.
pork- and poultry-derived food products. Therefore, a strict monitoring of Salmonella serotypes in food-producing animals is needed to limit the transmission of the pathogen to humans. Additionally, ...
A Practical Method to Implement Strain-Level Metagenomics-Based Foodborne Outbreak Investigation and Source Tracking in Routine.
Sigrid C.J. De Keersmaecker Source: Microorganisms, Volume 8, Issue 8 (2020) Keywords: food surveillance Metagenomics outbreak SNP analysis STEC whole genome Abstract: The management of a foodborne ...
The Benefits of Whole Genome Sequencing for Foodborne Outbreak Investigation from the Perspective of a National Reference Laboratory in a Smaller Country.
whole genome sequencing Abstract: Gradually, conventional methods for foodborne pathogen typing are replaced by whole genome sequencing (WGS). Despite studies describing the overall benefits, National ...
Perceived utility and feasibility of pathogen genomics for public health practice: a survey among public health professionals working in the field of infectious diseases, Belgium, 2019
Devleesschauwer Source: BMC Public Health, Volume 20, Issue 1 (2020) Keywords: Next-generation sequencing pathogen genomics Public Health Practice survey whole-genome sequencing Abstract: Background Pathogen ...
Perceived utility and feasibility of pathogen genomics for public health practice: a survey among public health professionals working in the field of infectious diseases, Belgium, 2019
Publication Type: Peer reviewed scientific article Authors: Nina Van Goethem; M. J. Struelens; Sigrid C.J. De Keersmaecker; Nancy Roosens; A. Robert; Sophie Quoilin; Herman Van Oyen; Brecht Devleesschauwer Source: BMC Public Health, Volume 20, Issue 1 (20 ...
Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates
C.J. De Keersmaecker Source: Scientific Reports, Volume 10, Issue 1 (2020) Keywords: DNA extraction kits outbreak investigation Shiga toxin producing Escherichia coli (STEC) Whole genome sequencing (WGS) ...