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Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates
C.J. De Keersmaecker Source: Scientific Reports, Volume 10, Issue 1 (2020) Keywords: DNA extraction kits outbreak investigation Shiga toxin producing Escherichia coli (STEC) Whole genome sequencing (WGS) ...
Whole-genome sequencing of serotype 4b isolated from ready-to-eat lentil salad in Algiers, Algeria.
Microbes New Infect, Volume 33 (2020) Abstract: is a Gram-positive food-borne pathogen causing a serious threat for public health. Here we announce the whole genome sequence (3 011 693 bp) of serotype 4b, ...
Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center: as a Proof-of-Concept.
being a well-established research method, the use of whole-genome sequencing (WGS) for routine molecular typing and pathogen characterization remains a substantial challenge due to the required ...
Use of next‐generation sequencing in microbial risk assessment
applications are not new in food microbiology with applications ranging from pathogen detection along the food chain, food epidemiology studies, whole genome analysis of food‐associated microorganisms up to ...
Survey on the Use of Whole-Genome Sequencing for Infectious Diseases Surveillance: Rapid Expansion of European National Capacities, 2015-2016.
identified as EU priorities. The sampling frame as well as bioinformatics analysis varied by pathogen/resistance issue and country. Core genome multilocus allelic profiling, also called cgMLST, was the most ...
Travel- and community-based transmission of multidrug-resistant Shigella sonnei lineage among international orthodox jewish communities
pathogen POPULATION risk S SB- IM Shigella Shigella sonnei Species Spread State States strain Transmission Travel trend trends United Kingdom United States United-kingdom whole genome Abstract: Shigellae are ...
Molecular subtyping of Salmonella Typhimurium with multiplex oligonucleotide ligation-PCR (MOL-PCR)
subtyping Multiplex assay ON pathogen PCR PRODUCTS protocol S Salmonella Salmonella enterica Salmonella typhimurium Subtyping Technique Type Viruses Abstract: A multiplex oligonucleotide ligation- PCR (MOL- ...
Development of xMAP and xTAG Luminex assays for public health surveillance
(2016) Keywords: Development health Indoor air Luminex pathogen public public health Public-health Subtyping Health Topics: Health and disease monitoring Surveillance de la santé et des maladies Ziekten ...
Molecular and clinical investigation of Zika virus outbreak in New Caledonia
Molecular neurological non-invasive ON outbreak outbreak investigation pathogen public public health Public-health region result results Rna Sample Samples SENSITIVITY serum Spread strain time urine VIRUS WHO ...
Experimental evidence for proteins constituting virion components and particle morphogenesis of bacteriophage ZF40.
363, Issue 6 (2016) Keywords: Bacteriophages Capsid Proteins Gene Order Genome, Viral Open Reading Frames Proteome Viral Proteins Virion Abstract: Bacteriophage ZF40 is the only currently available, ...