Search results - 11 results
Nationwide quality assurance of high-throughput diagnostic molecular testing during the SARS-CoV-2 pandemic: role of the Belgian National Reference Centre.
Henin, Coralie; Pairoux, Gregor; COVID-19 Genomics Belgium consortium; Maes, Piet; Van Ranst, Marc; Lagrou, Katrien; Dequeker, Elisabeth; André, Emmanuel Source: Virol J, Volume 21, Issue 1 (2024) ...
Genomic monitoring of SARS-CoV-2 variants using sentinel SARI hospital surveillance.
Issue 10 (2023) Keywords: COVID-19 Genomics hospitals Humans Pandemics Pneumonia SARS-CoV-2 Sentinel Surveillance Abstract: BACKGROUND: To support the COVID-19 pandemic response, many countries, including ...
A global genomic analysis of Salmonella Concord reveals lineages with high antimicrobial resistance in Ethiopia.
Nat Commun, Volume 14, Issue 1 (2023) Keywords: Anti-Bacterial Agents Drug Resistance, Bacterial Ethiopia Genomics Humans Salmonella Abstract: Antimicrobial resistant Salmonella enterica serovar Concord ...
First Belgian Report of Ertapenem Resistance in an ST11 Klebsiella Pneumoniae Strain Isolated from a Dog Carrying blaSCO-1 and blaDHA-1 Combined with Permeability Defects
(MLST) and the identification and localization of antimicrobial resistance (AMR) and virulence-associated genes. Three plasmids were reconstructed from the whole-genome sequence (WGS) data: the conjugative ...
Whole-Genome Sequencing-Based Antimicrobial Resistance Characterization and Phylogenomic Investigation of 19 Multidrug-Resistant and Extended-Spectrum Beta-Lactamase-Positive Escherichia coli Strains Collected From Hospital Patients in Benin in 2019.
effective antibiotics. We used whole-genome sequencing (WGS) to evaluate antimicrobial resistance and the phylogenomic relationships of 19 ESBL-positive isolates collected from surgical site infections in ...
Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center: as a Proof-of-Concept.
being a well-established research method, the use of whole-genome sequencing (WGS) for routine molecular typing and pathogen characterization remains a substantial challenge due to the required ...
Development of a real-time PCR method for the genoserotyping of Salmonella Paratyphi B variant Java.
Paratyphi B is of major importance as these two variants have different pathogenic profiles. While D-tartrate non-fermenting S. Paratyphi B isolates are the causative agent of typhoid-like fever, D-tartrate ...
Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:.
Salmonella; Salmonella enterica; Salmonella typhimurium; SNP; subtyping; whole genome sequencing Abstract: Whole genome sequencing represents a promising new technology for subtyping of bacterial pathogens ...
Whole Genome Sequence Analysis of Salmonella Enteritidis PT4 Outbreaks from a National Reference Laboratory's Viewpoint.
Brussels Case case studies Case study case-study Common data Discussion disease Diseases electronic epidemiology expertise food foodborne outbreaks future gene Genetic genetics Genome genomic Genomics health ...
Status and potential of bacterial genomics for public health practice: a scoping review
. The purpose of this scoping review is to identify and characterize the recent literature concerning the application of bacterial pathogen genomics for public health practice and to assess the added ...