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Introduction of WGS in food microbiology: advantages and challenges
prepared using a self-tasking mandate and published after public consultation. The added value of WGS for the detection of foodborne outbreaks and bacterial risk assessment has been demonstrated on many ...
Application of a strain-level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak
2 weeks after receipt of the sample, which was freshly prepared tartar sauce in a meal cooked at the school. Our team used this outbreak as a case study to deliver a proof of concept for a short-read ...
Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies
detection and for fast outbreak investigation that can be implemented in routine laboratories on samples prepared with the current standard practices. Health Topics: Food-borne illness Voedseltoxi-infecties ...
Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates.
laboratories is essential to support foodborne pathogen control, including outbreak investigation. This study evaluated eight commercial DNA preparation kits for their potential influence on: (i) DNA quality for ...