Search results - 37 results
Towards facilitated interpretation of shotgun metagenomics long-read sequencing data analyzed with KMA for the detection of bacterial pathogens and their antimicrobial resistance genes
Publication Type: Peer reviewed scientific article Authors: Mathieu Gand; Navickaite, Indre; Bartsch, Lee-Julia; Grützke, Josephine; Overballe-Petersen, Søren; Rasmussen, Astrid; Otani, Saria; ...
Strain-level characterization without culture enrichment? Easing and accelerating outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling
precise pathogen characterization, contributing to improved food safety and public health. Health Topics: Consommation et sécurité alimentaires Food consumption and food safety Voedselconsumptie en ...
Development of strain-level shotgun metagenomics approaches to detect and characterize microbiological contaminants in the context of food safety
Safety microbiological contaminants shotgun metagenomics Abstract: Foodborne contaminations are a global burden on public health worldwide. For many years, and until recently, the microbial contaminants ...
Comparison of 6 DNA extraction methods for isolation of high yield of high molecular weight DNA suitable for shotgun metagenomics Nanopore sequencing to detect bacteriaAbstractBackgroundResultsConclusion
Publication Type: Peer reviewed scientific article Authors: Mathieu Gand; Bram Bloemen; Kevin Vanneste; Nancy Roosens; Sigrid C.J. De Keersmaecker Source: BMC Genomics, Volume 24, Issue 1 (2023) ...
Development of a Taxon-Specific Real-Time Polymerase Chain Reaction Method to Detect Trichoderma reesei Contaminations in Fermentation Products
Publication Type: Peer reviewed scientific article Authors: Fraiture, Marie-Alice; Gobbo, Andrea; N. Papazova; Roosens, Nancy H. C. Source: Fermentation, Volume 9, Issue 11 (2023) Health Topics: ...
Targeted High-Throughput Sequencing Enables the Detection of Single Nucleotide Variations in CRISPR/Cas9 Gene-Edited Organisms
Publication Type: Peer reviewed scientific article Authors: Marie-Alice Fraiture; Jolien D'aes; Emmanuel Guiderdoni; Anne-Cécile Meunier; Thomas Delcourt; Stefan Hoffman; Els Vandermassen; ...
Development of a taxon-specific real-time PCR method targeting the Bacillus subtilis group to strengthen the control of genetically modified bacteria in fermentation products
Publication Type: Peer reviewed scientific article Authors: Marie-Alice Fraiture; Andrea Gobbo; N. Papazova; Nancy Roosens Source: Fermentation, Volume 8, Issue 2 (2022) Keywords: additives and ...
Shotgun metagenomics as a ONE Health tool for better protecting human health
identify all biological material in a sample without a priori knowing what to look for, could transform the way specific key public health questions can be addressed, in a ONE Health context. Metagenomics is ...
Development, evaluation and optimization of next generation sequencing data analysis tools in support of a fast response for public health and food chain safety
Publication Type: Dissertation Authors: Assia Saltykova Source: Ghent University, Ghent, Belgium, p.308 (2022) Keywords: bioinformatics tools Database GMO Metagenomics NGS outbreak investigation ...
Detection and identification of authorized and unauthorized GMOs using high-throughput sequencing with the support of a sequence-based GMO database
Publication Type: Peer reviewed scientific article Authors: Assia Saltykova; Julien Van Braekel; N. Papazova; Marie-Alice Fraiture; Deforce, Dieter; Kevin Vanneste; Sigrid C.J. De Keersmaecker; ...