Search results - 12 results

Development of strain-level shotgun metagenomics approaches to detect and characterize microbiological contaminants in the context of food safety

study within the problematic of the spread of antimicrobial resistance in the environment. These organisms are genetically modified to enhance the production of a compound (e.g. enzymes, vitamins), and ...

Report on the feasibility of using Hi-C sequencing for metagenomics to define the context of AMR genes

https://zenodo.org/record/7433351#.Y7aj4HbMKM8 Keywords: Antimicrobial resistance Hi-C metagenomics Health Topics:  Antimicrobial resistance (AMR) Food consumption and food safety Animal health Health and environment Résistance aux ...

Optimised long-read sequence bioinformatics tool for the analysis of the resistome and microbial communities

https://doi.org/10.5281/zenodo.7433258 Keywords: Antimicrobial resistance bioinformatics Long read metagenomic sequencing Microbial community Resistome Health Topics:  Antimicrobial resistance (AMR) Food consumption and food safety ...

Report on initial findings of on-site diagnostic tests and IT solutions for human clinical, veterinary and environmental samples for early warning of emerging resistant pathogens

https://doi.org/10.5281/zenodo.7433281 URL: https://doi.org/10.5281/zenodo.7433281 Keywords: Long read metagenomics Metagenome On-site metagenomics Health Topics:  Antimicrobial resistance (AMR) Food consumption and food safety Animal ...

Shotgun metagenomics as a ONE Health tool for better protecting human health

composing genes such as virulence or antimicrobial resistance (AMR) genes, without prior knowledge, nor the need to isolate. Such approaches could offer efficient and fast solutions to limitations faced by ...

Listeria monocytogenes isolates from Cornu aspersum snails: Whole genome-based characterization and host-pathogen interactions in a snail infection model.

virulence, and host-pathogen mechanisms of interactions in a snail infection model. Most of isolates (66.7%) were characterized as multidrug resistant (MDR) and belonged to clonal complexes (CC s) which are ...

Development of a real-time PCR marker targeting a new unauthorized genetically modified microorganism producing protease identified by DNA walking

Microbiology, Volume 354 (2021) Keywords: Antimicrobial resistance genes DNA walking anchored on pUB110 food and feed safety Genetically modified bacteria Protease real-time PCR detection Abstract: A PCR-based ...

Review on current scientific literature and overview of commercially available methods for on-site DNA isolation

https://doi.org/10.5281/zenodo.4724557 Keywords: AMR Antimicrobial resistance DNA isolation literature review metagenomic On-site Health Topics:  Health and disease monitoring Food consumption and food safety Animal health Health and ...

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