Search results - 24 results

Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.

accurate phylogenetic results using nanopore sequencing was evaluated. PACU allowed accurate identification of outbreak clusters for both species using all technologies/chemistries, but ONT R9 results ...

Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.

accurate phylogenetic results using nanopore sequencing was evaluated. PACU allowed accurate identification of outbreak clusters for both species using all technologies/chemistries, but ONT R9 results ...

Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.

accurate phylogenetic results using nanopore sequencing was evaluated. PACU allowed accurate identification of outbreak clusters for both species using all technologies/chemistries, but ONT R9 results ...

Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.

phylogenomic analysis. Additionally, the minimum sequencing time required to obtain accurate phylogenetic results using nanopore sequencing was evaluated. PACU allowed accurate identification of outbreak ...

The global burden of neglected zoonotic diseases: Current state of evidence

and DALY s were extracted for each eligible study. A total of 1887 records were screened, resulting in 74 eligible studies. The highest number of BoD was found for non-typhoidal salmonellosis (23), ...

Assessing the burden of Taenia solium cysticercosis in Burundi, 2020

calculate the 95% uncertainty interval (UI) for each parameter and perform sensitivity analyses. Results. In Burundi, 4.26 million USD (95% UI, 1,858,308–8,190,951) were estimated as economic impact due to T. ...

Human health and economic impact of neurocysticercosis in Uganda

reference year. Uncertainty was propagated using 100,000 Monte Carlo simulations. Results In 2010, NCC was estimated to cause more than 9000 (CI: 7685–11,071) new cases of epilepsy and nearly 1500 new cases ...

Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies

serotyped. This was achieved by applying a bioinformatics method on the long reads using reference-based classification. The same result could be obtained after 24-h sequencing on the more recent lower output ...

Burden of foodborne diseases: think global, act local

input for policy. We describe the current knowledge base on burden of FBD s, highlight examples of well-established studies, and how results have been used for decision-making. We discuss challenges in ...

Staphylococcal enterotoxin gene cluster: prediction of enterotoxin (SEG and SEI) production and of the source of food poisoning based on Saβ typing.

derived). The amount of SEG and SEI produced also correlated with the Saβ type and the CC of a strain. The present results show promising indications that the production of SEG and SEI can be predicted based ...

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