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Keeping our food safe: the use of sequencing technologies for foodborne outbreak investigations

sequencing technologies Abstract: Keeping our food safe:  how the sequencing technologies can be used for foodborne outbreak investigations (WGS and metagenomics) Health Topics:  Food consumption and food ...

Hemorrhagic bowel syndrome in dairy cattle: Gross, histological, and microbiological characterization.

sequencing showed a polymicrobial population at the hematoma and unaffected intestine, with mostly mild presence of at selective culture. Gross and microscopic lesions, as well as the culture and sequencing ...

Homologous and Heterologous Prime-Boost Vaccination: Impact on Clinical Severity of SARS-CoV-2 Omicron Infection among Hospitalized COVID-19 Patients in Belgium

of BA.1, BA.2, BA.4 or BA.5 Omicron infection (confirmed by whole genome sequencing) among hospitalized COVID-19 patients using observational data from national COVID-19 registries. In addition, it was ...

Development of strain-level shotgun metagenomics approaches to detect and characterize microbiological contaminants in the context of food safety

have always been analyzed and characterized after isolation. Since the advent of second generation sequencing, it has been possible to characterize the complete genome of these isolates to the SNP level. ...

Genomic Insights into Methicillin-Resistant Staphylococcus aureus spa type t899 Isolates Belonging to Different Sequence Types

Publication Type: Peer reviewed scientific article Authors: Tegegne, Henok Ayalew; Ivana Koláčková; Martina Florianová; P Wattiau; Tereza Gelbíčová; Cécile Boland; Jean-Yves Madec; Marisa Haenni; Renata Karpíšková Source: Applied and Environmental Microbi ...

Combined Phylogeographic Analyses and Epidemiologic Contact Tracing to Characterize Atypically Pathogenic Avian Influenza (H3N1) Epidemic, Belgium, 2019.

epidemic that occurred in Belgium during 2019. Virus genomes from 104 clinical samples originating from 85% of affected farms were sequenced. A spatially explicit phylogeographic analysis confirmed ...

Development of a Taxon-Specific Real-Time Polymerase Chain Reaction Method to Detect Trichoderma reesei Contaminations in Fermentation Products

cover a sequence of 130 bp from the translation elongation factor alpha 1 (Tef1) gene of T. reesei, this real-time PCR method, namely TR, allows for the screening of commercial fermentation products ...

Targeted High-Throughput Sequencing Enables the Detection of Single Nucleotide Variations in CRISPR/Cas9 Gene-Edited Organisms

sequencing PCR-based enrichment single nucleotide variations Transgenic Rice Abstract: Similar to genetically modified organisms (GMO s) produced by classical genetic engineering, gene-edited (GE) organisms ...

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