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Introduction of WGS in food microbiology: advantages and challenges
Keywords: antimicrobial resistance (AMR) Food Safety foodborne outbreak investigation Monitoring SciCom Whole genome sequencing (WGS) Abstract: In October 2021 the Scientific Committee of the Federal Agency ...
Listeria surveillance in Belgium
evolution in molecular typing, the NRC completely switched to Whole-Genome-Sequencing (WGS) for cluster detection. Therefore, an in-house Galaxy-based bio-informatic pipeline was developed. For the strain ...
Buruli ulcer
about disease transmission and there is no vaccine. There have been several recent advances in the field. These include sequencing of the bacterial genome and of the giant plasmid responsible for ...
Effect of PstS sub-units or PknD deficiency on the survival of Mycobacterium tuberculosis.
Molecular Sequence Data Mycobacterium tuberculosis Protein Kinases Reverse Transcriptase Polymerase Chain Reaction Tuberculosis Abstract: The membrane-associated phosphate-specific transporter (Pst) complex ...
Genomic analysis of Pseudomonas aeruginosa phages LKD16 and LKA1: establishment of the phiKMV subgroup within the T7 supergroup.
Sequences Sequence Analysis Sequence Homology Terminal Repeat Sequences Transmission Viral Viral Genes Viral Genome Viral Proteins Abstract: Lytic Pseudomonas aeruginosa phages LKD16 and LKA1 were locally ...
Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei.
antimicrobials, including the fluoroquinolones. Here we analyse nearly 400 S. sonnei whole genome sequences from both endemic and non-endemic regions to delineate the evolutionary history of the recently emergent ...
Development and evaluation of a core genome multilocus sequence typing scheme for Paenibacillus larvae, the deadly American foulbrood pathogen of honeybees.
Genome, Bacterial Multilocus Sequence Typing Paenibacillus larvae whole genome sequencing Abstract: Paenibacillus larvae is the causative agent of the fatal American foulbrood disease in honeybees (Apis ...