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Isolation of Drug-Resistant Gallibacterium anatis from Calves with Unresponsive Bronchopneumonia, Belgium.
antimicrobial drugs. Whole-genome sequencing revealed 24 different antimicrobial-resistance determinants, including genes not previously described in the Gallibacterium genus or even the Pasteurellaceae family, ...
Whole-genome-based phylogenomic analysis of the Belgian 2016-2017 influenza A(H3N2) outbreak season allows improved surveillance.
Influenza, Human Phylogeny Public Health Surveillance whole genome sequencing Abstract: Seasonal influenza epidemics are associated with high mortality and morbidity in the human population. Influenza ...
The AMR-ARRAY: A modular bead array detecting β-lactam, (fluoro) quinolone, colistin, aminoglycoside and macrolide resistance determinants in Gram-negative bacteria.
(856/904) of the assessed resistances. When compared to resistance profiles inferred from whole genome sequencing results, the AMR- ARRAY showed a selectivity and specificity of 99.3% and 100%, respectively. ...
High-resolution melting PCR analysis for rapid genotyping of Burkholderia mallei.
genome sequences of 45 B. mallei isolates identified 3 lineages for this species. In this study, we designed a high-resolution melting (HRM) method for the screening of 15 phylogenetically informative SNP ...
A general approach to identify low-frequency variants within influenza samples collected during routine surveillance.
value of LFV for routine influenza monitoring, potential associations between patient data and whole genome sequencing data were investigated. A significant association was found between a high prevalence ...
BSFM 2022- International outbreak of Salmonella Typhimurium linked to a chocolate factory in 2022: Belgian findings
Whole genome sequencing (WGS) analysis of human and food isolates revealed the presence of two clusters: HC5_296366 (cluster 1) and HC5_298160 (cluster 2). The investigation of the outbreak as well as ...
Exploring the added value of Whole Genome Sequencing in routine and pandemic viral surveillance
Publication Type: Dissertation Authors: Laura Van Poelvoorde Source: (2023) Abstract: Whole genome sequencing (WGS) has opened up a lot of new possibilities for virus surveillance, however, many ...