Search results - 133 results

Evaluation of whole genome sequencing for routine subtyping of Salmonella Typhimurium for surveillance and outbreak investigation

Phenotype resistance routine S Salmonella Salmonella enterica Salmonella typhimurium Shigella situation Species study Subtyping Surveillance Technique technology whole genome whole genome sequencing Abstract: ...

Genome sequence of the Salmonella enterica subsp. enterica serovar Namur strain 05-2929, lacking the Salmonella atypical fimbrial operon.5090

Sequencing for public health, NA, Issue =WIV-ISP, NA (2014) Keywords: application applications Genome health Operon public public health Public-health Salmonella Salmonella enterica serovar Namur shortgun ...

Laboratory capability for molecular detection and confirmation of novel coronavirus in Europe, November 2012287

Transcriptase Polymerase Chain Reaction Rna Rna,Viral Sample Samples SB- IM SCREENING Sequence Analysis standards survey Sweden Target TESTING virology WHO whole genome world World Health World Health ...

DNase SISPA-next generation sequencing confirms Schmallenberg virus in Belgian field samples and identifies genetic variation in Europe.

4.27-4.89 log(10) RNA copies per µL did not allow identification using DN ase SISPA- NGS. This partial sequence information was compared to the whole genome sequence of SBV isolated from bovines in Germany, ...

Monitoring of influenza: Whole-Genome Sequencing to provide insights in the disease severity

Publication Type: Scientific poster, presentation or proceeding Authors: Laura Van Poelvoorde; Sigrid C.J. De Keersmaecker; Kevin Vanneste; Steven Van Gucht; Isabelle Thomas; Xavier Saelens; Cyril Barbezange; Nancy Roosens Source: The 6th International In ...

Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates.

C.J. De Keersmaecker Source: Sci Rep, Volume 10, Issue 1 (2020) Keywords: NGS pathogenic E. coli STEC WGS Abstract: Whole genome sequencing (WGS) has proven to be the ultimate tool for bacterial isolate ...

Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei.

antimicrobials, including the fluoroquinolones. Here we analyse nearly 400 S. sonnei whole genome sequences from both endemic and non-endemic regions to delineate the evolutionary history of the recently emergent ...

Global phylogenomics of multidrug-resistant Salmonella enterica serotype Kentucky ST198.

an emerging problem within this serotype. We used whole-genome sequencing (WGS) to investigate the phylogenetic structure and AMR content of 121 S.enterica serotype Kentucky sequence type 198 isolates ...

Status and potential of bacterial genomics for public health practice: a scoping review

of whole-genome sequencing (WGS) data for (1) source tracing, (2) early outbreak detection, (3) unraveling transmission dynamics, (4) monitoring drug resistance, (5) detecting cross-border transmission ...

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