Search results - 126 results

Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei.

antimicrobials, including the fluoroquinolones. Here we analyse nearly 400 S. sonnei whole genome sequences from both endemic and non-endemic regions to delineate the evolutionary history of the recently emergent ...

Global phylogenomics of multidrug-resistant Salmonella enterica serotype Kentucky ST198.

an emerging problem within this serotype. We used whole-genome sequencing (WGS) to investigate the phylogenetic structure and AMR content of 121 S.enterica serotype Kentucky sequence type 198 isolates ...

Status and potential of bacterial genomics for public health practice: a scoping review

of whole-genome sequencing (WGS) data for (1) source tracing, (2) early outbreak detection, (3) unraveling transmission dynamics, (4) monitoring drug resistance, (5) detecting cross-border transmission ...

Integrative transnational analysis to dissect tuberculosis transmission events along the migratory route from Africa to Europe.

Mycobacterium tuberculosis isolates from these recently arrived migrants were analysed by Mycobacterial Interspersed Repetitive-Unit/Variable-Number of Tandem Repeat (MIRU- VNTR) and subsequent whole genome ...

Whole-genome-based phylogenomic analysis of the Belgian 2016-2017 influenza A(H3N2) outbreak season allows improved surveillance.

Influenza, Human Phylogeny Public Health Surveillance whole genome sequencing Abstract: Seasonal influenza epidemics are associated with high mortality and morbidity in the human population. Influenza ...

The AMR-ARRAY: A modular bead array detecting β-lactam, (fluoro) quinolone, colistin, aminoglycoside and macrolide resistance determinants in Gram-negative bacteria.

(856/904) of the assessed resistances. When compared to resistance profiles inferred from whole genome sequencing results, the AMR- ARRAY showed a selectivity and specificity of 99.3% and 100%, respectively. ...

High-resolution melting PCR analysis for rapid genotyping of Burkholderia mallei.

genome sequences of 45 B. mallei isolates identified 3 lineages for this species. In this study, we designed a high-resolution melting (HRM) method for the screening of 15 phylogenetically informative SNP ...

Exploring the added value of Whole Genome Sequencing in routine and pandemic viral surveillance

Publication Type: Dissertation Authors: Laura Van Poelvoorde Source: (2023) Abstract: Whole genome sequencing (WGS) has opened up a lot of new possibilities for virus surveillance, however, many ...

Development of a bioinformatics pipeline for the routine analysis of Influenza whole genome sequencing data

Publication Type: Scientific poster, presentation or proceeding Authors: Qiang Fu; Raf Winand; Julien Van Braekel; Cyril Barbezange; Veronik Hutse; Isabelle Thomas; Steven Van Gucht; Sigrid C.J. De Keersmaecker; Nancy Roosens; Kevin Vanneste Source: Europ ...

Development and evaluation of a core genome multilocus sequence typing scheme for Paenibacillus larvae, the deadly American foulbrood pathogen of honeybees.

Genome, Bacterial Multilocus Sequence Typing Paenibacillus larvae whole genome sequencing Abstract: Paenibacillus larvae is the causative agent of the fatal American foulbrood disease in honeybees (Apis ...

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