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Prediction of Susceptibility to First-Line Tuberculosis Drugs by DNA Sequencing
susceptibility to first-line antituberculosis drugs has not been clear. METHODS: We obtained whole-genome sequences and associated phenotypes of resistance or susceptibility to the first-line antituberculosis ...
Application of whole genome data for in silico evaluation of primers and probes routinely employed for the detection of viral species by RT-qPCR using dengue virus as a case study.
targeted nucleic acid regions. Whole genome sequencing allows to characterize and track such changes, which in turn enables to evaluate, optimize, and (re-)design novel and existing RT-qPCR methods. The ...
Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:.
Salmonella; Salmonella enterica; Salmonella typhimurium; SNP; subtyping; whole genome sequencing Abstract: Whole genome sequencing represents a promising new technology for subtyping of bacterial pathogens. ...
Detection of Plasmid-Mediated Colistin Resistance, mcr-1 and mcr-2 Genes, in Salmonella spp. Isolated from Food at Retail in Belgium from 2012 to 2015.
mcr-2 determinant has been confirmed by whole genome sequencing and allowed the localization of these two genes on IncX4 type plasmids. We report here the presence of mcr-1 and the first mcr-2 gene in ...
Guest lecture molecular- microbial techniques: the use of whole genome sequencing (WGS) for typing of bacterial pathogenic isolates
UGent, NA (2016) Keywords: Genome M Molecular next generation sequencing pathogenic Technique typing use WGS whole genome whole genome sequencing Health Topics: Health and disease monitoring Surveillance ...
Development of a bioinformatics pipeline for routine analysis of whole genome sequencing data for typing of Neisseria meningitidis
Biology data Development Genome Neisseria routine whole genome whole genome sequencing Health Topics: Health and disease monitoring Surveillance de la santé et des maladies Ziekten en gezondheid in kaart ...
Whole Genome Sequence Analysis of Salmonella Enteritidis PT4 Outbreaks from a National Reference Laboratory's Viewpoint.
and human isolates being available, and this for both outbreaks, made these the ideal case study for a retrospective whole genome sequencing (WGS) analysis with the goal to investigate the feasibility ...
Genome sequence of the Salmonella enterica subsp. enterica serovar Namur strain 05-2929, lacking the Salmonella atypical fimbrial operon.5090
Sequencing for public health, NA, Issue =WIV-ISP, NA (2014) Keywords: application applications Genome health Operon public public health Public-health Salmonella Salmonella enterica serovar Namur shortgun ...