Search results - 5 results

Listeria surveillance in Belgium

evolution in molecular typing, the NRC completely switched to Whole-Genome-Sequencing (WGS) for cluster detection. Therefore, an in-house Galaxy-based bio-informatic pipeline was developed. For the strain ...

Strategies to detect unauthorized genetically modified organisms in food and feed chain

GMO in alimentary matrices using exclusively the NGS technology, through a whole genome sequencing (WGS) approach, was also investigated. As this last approach does not theoretically require any prior ...

Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates.

Keersmaecker, S C J * Source: Sci Rep, Volume 10, Issue 1 (2020) Keywords: NGS pathogenic E. coli STEC WGS Abstract: Whole genome sequencing (WGS) has proven to be the ultimate tool for bacterial isolate ...

Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei.

to several key antimicrobials, including the fluoroquinolones. Here we analyse nearly 400 S. sonnei whole genome sequences from both endemic and non-endemic regions to delineate the evolutionary ...

Global phylogenomics of multidrug-resistant Salmonella enterica serotype Kentucky ST198.

ciprofloxacin, is an emerging problem within this serotype. We used whole-genome sequencing (WGS) to investigate the phylogenetic structure and AMR content of 121 S.enterica serotype Kentucky sequence type 198 ...

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