Résultats de la recherche - 38 results

The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics

collections Cyanobacteria Genomics Gloeobacterales Metagenomics nextflow phylogenomics Phylogeny Singularity containers Workflow Abstract: Background: Microbial culture collections play a key role in taxonomy ...

Strain-level characterization without culture enrichment? Easing and accelerating outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling

Keersmaecker Source: BSFM, BSFM, Brussels, Belgium (2023) Keywords: adaptive sampling nanopore outbreak investigation shotgun metagenomics Abstract: Introduction Traditionally, the investigation of suspect food ...

RNA sequencing of avian paramyxovirus (Paramyxoviridae, Avulavirinae) isolates from wild mallards in Belgium, 2021: complete genomes and coinfections.

genome segments of an AIV of subtype H11N9 could be de novo assembled from the sequencing data. Besides an AIV coinfection, RNA metagenomic data from the APMV-4 isolate also showed evidence of ...

Keeping our food safe: the use of sequencing technologies for foodborne outbreak investigations

sequencing technologies Abstract: Keeping our food safe:  how the sequencing technologies can be used for foodborne outbreak investigations (WGS and metagenomics) Health Topics:  Food consumption and food ...

Development of strain-level shotgun metagenomics approaches to detect and characterize microbiological contaminants in the context of food safety

Safety microbiological contaminants shotgun metagenomics Abstract: Foodborne contaminations are a global burden on public health worldwide. For many years, and until recently, the microbial contaminants ...

Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillanceAbstract

Publication Type: Peer reviewed scientific article Authors: Bram Bloemen; Mathieu Gand; Kevin Vanneste; Marchal, Kathleen; Nancy Roosens; Sigrid C.J. De Keersmaecker Source: Scientific Reports, Volume 13, Issue 1 (2023) Health Topics:  Health and environm ...

Report on the feasibility of using Hi-C sequencing for metagenomics to define the context of AMR genes

https://zenodo.org/record/7433351#.Y7aj4HbMKM8 Keywords: Antimicrobial resistance Hi-C metagenomics Health Topics:  Antimicrobial resistance (AMR) Food consumption and food safety Animal health Health and environment Résistance aux ...

Optimised long-read sequence bioinformatics tool for the analysis of the resistome and microbial communities

https://doi.org/10.5281/zenodo.7433258 Keywords: Antimicrobial resistance bioinformatics Long read metagenomic sequencing Microbial community Resistome Health Topics:  Antimicrobial resistance (AMR) Food consumption and food safety ...

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