Résultats de la recherche - 264 results
Development of an NGS-Based Workflow for Improved Monitoring of Circulating Plasmids in Support of Risk Assessment of Antimicrobial Resistance Gene Dissemination.
Publication Type: Peer reviewed scientific article Authors: Bas Berbers; Pieter-Jan Ceyssens; Bogaerts, Pierre; Kevin Vanneste; Nancy Roosens; Marchal, Kathleen; Sigrid C.J. De Keersmaecker Source: ...
Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study.
Publication Type: Peer reviewed scientific article Authors: Assia Saltykova; Florence E Buytaers; Sarah Denayer; Bavo Verhaegen; Piérard, Denis; Nancy Roosens; Marchal, Kathleen; Sigrid C.J. De ...
A Practical Method to Implement Strain-Level Metagenomics-Based Foodborne Outbreak Investigation and Source Tracking in Routine.
Publication Type: Peer reviewed scientific article Authors: Florence E Buytaers; Assia Saltykova; Sarah Denayer; Bavo Verhaegen; Kevin Vanneste; Nancy Roosens; Piérard, Denis; Marchal, Kathleen; ...
Use of Whole Genome Sequencing Data for a First in Silico Specificity Evaluation of the RT-qPCR Assays Used for SARS-CoV-2 Detection.
Publication Type: Peer reviewed scientific article Authors: Mathieu Gand; Kevin Vanneste; Isabelle Thomas; Steven Van Gucht; Arnaud Capron; Philippe Herman; Nancy Roosens; Sigrid C.J. De ...
The Benefits of Whole Genome Sequencing for Foodborne Outbreak Investigation from the Perspective of a National Reference Laboratory in a Smaller Country.
genotypes. Besides a universal, all-in-one workflow with less hands-on-time (five versus seven actual working days for WGS versus conventional), WGS-based cgMLST-typing demonstrated increased resolution. This ...
Development of a genoserotyping system for the identification of Salmonella serotypes
Publication Type: Dissertation Authors: Mathieu Gand Source: Ghent University, Ghent, p.185 (2020) Keywords: Salmonella; Genoserotyping; Luminex; Decision support system; Food safety; real-time pcr; ...
Gender‐dependent association between exhaled nitric oxide and the CC16 38AA genotype in young school children
CC16 38AA genotype had higher odds of increased FeNO (>30 ppb) compared with their peers with the wild‐type genotype 38GG (OR, 9.85; 95% CI, 2.09‐46.4; P = .004). This association was female gender ...
Perceived utility and feasibility of pathogen genomics for public health practice: a survey among public health professionals working in the field of infectious diseases, Belgium, 2019
and control infectious diseases. Having a high level of expertise in the field of pathogen genomics was the strongest predictor of a positive attitude (OR = 4.04, 95% CI = 1.11 – 17.23). A significantly ...
Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus
(GM) Bacillus subtilis isolated as unexpected contamination in a feed additive, and therefore considered unauthorized (RASFF 2014.1249), as a case study. In GM organisms, AMR genes are used as selection markers. ...
First detection of a plasmid located carbapenem resistant blaVIM-1 gene in E. coli isolated from meat products at retail in Belgium in 2015
Manuscript versions: DOI: https://doi.org/10.1016/j.ijfoodmicro.2020.108624 File: Version: Published Full text access: Public Access Full text language: English Category: A1 FOS Classification: 1.6 ...