Résultats de la recherche - 6 results
Transforming Shiga toxin-producing surveillance through whole genome sequencing in food safety practices.
investigation and is not yet fully implemented in food safety surveillance across all European countries, in contrast to for example in the United States. METHODS: In this study, WGS was retrospectively applied ...
Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods
Publication Type: Peer reviewed scientific article Authors: Bert Bogaerts; Stéphanie Nouws; Bavo Verhaegen; Sarah Denayer; Julien Van Braekel; Raf Winand; Qiang Fu; Florence Crombé; Denis Piérard; ...
Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study.
Publication Type: Peer reviewed scientific article Authors: Assia Saltykova; Florence E Buytaers; Sarah Denayer; Bavo Verhaegen; Piérard, Denis; Nancy Roosens; Marchal, Kathleen; Sigrid C.J. De ...
A Practical Method to Implement Strain-Level Metagenomics-Based Foodborne Outbreak Investigation and Source Tracking in Routine.
Publication Type: Peer reviewed scientific article Authors: Florence E Buytaers; Assia Saltykova; Sarah Denayer; Bavo Verhaegen; Kevin Vanneste; Nancy Roosens; Piérard, Denis; Marchal, Kathleen; ...
The Benefits of Whole Genome Sequencing for Foodborne Outbreak Investigation from the Perspective of a National Reference Laboratory in a Smaller Country.
genotypes. Besides a universal, all-in-one workflow with less hands-on-time (five versus seven actual working days for WGS versus conventional), WGS-based cgMLST-typing demonstrated increased resolution. This ...
Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates
DOI: https://doi.org/10.1038/s41598-020-71207-3 File: Version: Published Full text access: Public Access Full text language: English Category: A1 FOS Classification: 2.11 Other engineering and ...