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Shotgun metagenomics as a ONE Health tool for better protecting human health

Publication Type: Scientific poster, presentation or proceeding Authors: Mathieu Gand; Florence E Buytaers; Bram Bloemen; Assia Saltykova; Sarah Denayer; Bavo Verhaegen; Wesley Mattheus; Denis ...

Development, evaluation and optimization of next generation sequencing data analysis tools in support of a fast response for public health and food chain safety

Publication Type: Dissertation Authors: Assia Saltykova Source: Ghent University, Ghent, Belgium, p.308 (2022) Keywords: bioinformatics tools Database GMO Metagenomics NGS outbreak investigation ...

Detection and identification of authorized and unauthorized GMOs using high-throughput sequencing with the support of a sequence-based GMO database

Publication Type: Peer reviewed scientific article Authors: Assia Saltykova; Julien Van Braekel; N. Papazova; Marie-Alice Fraiture; Deforce, Dieter; Kevin Vanneste; Sigrid C.J. De Keersmaecker; ...

Application of a strain-level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak

Publication Type: Peer reviewed scientific article Authors: Florence E Buytaers; Assia Saltykova; Wesley Mattheus; Bavo Verhaegen; Nancy Roosens; Kevin Vanneste; Valeska Laisnez; Hammami, Naïma; ...

Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:.

Publication Type: Peer reviewed scientific article Authors: Assia Saltykova; Wuyts, Véronique; Wesley Mattheus; Sophie Bertrand; Nancy Roosens; Marchal, Kathleen; Sigrid C.J. De Keersmaecker Source: ...

Data analysis associated with the use of whole genome sequencing for subtyping of pathogenic microorganisms, Salmonella Typhimurium as a case study

Publication Type: Scientific poster, presentation or proceeding Authors: Assia Saltykova; Wuyts,V.; Sophie Bertrand; Nancy Roosens; Marchal,K.; Sigrid C.J. De Keersmaecker Source: Applied ...

MinION sequencing technology to characterize unauthorized GM petunia plants circulating on the European Union market

Publication Type: Peer reviewed scientific article Authors: Marie-Alice Fraiture; Gabriella Ujhelyi; Jaroslava Ovesna; D. Van Geel; Sigrid C.J. De Keersmaecker; Assia Saltykova; N. Papazova; Nancy ...

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