Résultats de la recherche - 9 results
Transforming Shiga toxin-producing surveillance through whole genome sequencing in food safety practices.
circulating STEC strains and by illustrating its benefits, it aims to incite policymakers to support WGS uptake in food safety surveillance. Health Topics: Pathogene E. coli Pathogenic E. coli E. coli ...
Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods
Health Topics: Pathogenic E. coli Pathogene E. coli E. coli pathogènes Manuscript versions: DOI: https://doi.org/10.1099/mgen.0.000531 File: Version: Published Full text access: Public Access Full ...
Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study.
Topics: Pathogenic E. coli Food-borne illness Pathogene E. coli E. coli pathogènes Voedseltoxi-infecties (toxi-)infection alimentaire (TIA) Service: Pathogènes alimentaires Voedselpathogenen Foodborne ...
A Practical Method to Implement Strain-Level Metagenomics-Based Foodborne Outbreak Investigation and Source Tracking in Routine.
human cases, demonstrating the power of shotgun metagenomics for rapid outbreak investigation and source tracking. Health Topics: E. coli pathogènes (toxi-)infection alimentaire (TIA) Pathogene E. coli ...
The Benefits of Whole Genome Sequencing for Foodborne Outbreak Investigation from the Perspective of a National Reference Laboratory in a Smaller Country.
interpreting isolate relationships to outbreaks, and leveraging the true benefit of WGS in outbreak investigation and/or prevention. Health Topics: Pathogenic E. coli Food-borne illness Pathogene E. coli E. ...
Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates
challenges of standardizing protocols to support data portability and to enable full exploitation of its potential. Health Topics: Pathogenic E. coli Pathogene E. coli E. coli pathogènes Manuscript versions: ...
Global and regional source attribution of Shiga toxin-producing Escherichia coli infections using analysis of outbreak surveillance data
Topics: Pathogene E. coli Pathogenic E. coli E. coli pathogènes Service: Information sanitaire Gezondheidsinformatie Health information Manuscript versions: DOI: https://doi.org/10.1017/S095026881900116X ...
Associating sporadic, foodborne illness caused by Shiga toxin-producing Escherichia coli with specific foods: a systematic review and meta-analysis of case-control studies
Volume 147 (2019) Health Topics: Pathogenic E. coli Pathogene E. coli E. coli pathogènes Service: Information sanitaire Gezondheidsinformatie Health information Manuscript versions: DOI: ...
Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates.
C.J. De Keersmaecker Source: Sci Rep, Volume 10, Issue 1 (2020) Keywords: NGS pathogenic E. coli STEC WGS Abstract: Whole genome sequencing (WGS) has proven to be the ultimate tool for bacterial isolate ...