Résultats de la recherche - 11 results
Transforming Shiga toxin-producing surveillance through whole genome sequencing in food safety practices.
to isolates collected within the context of Belgian food safety surveillance and combined with data from clinical isolates to evaluate its benefits. A cross-sector WGS-based collection of 754 strains ...
Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods
bioinformatics workflows and parameters, however, complicates interoperability among (inter)national laboratories. We present a validation strategy applied to a bioinformatics workflow for Illumina data that ...
Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study.
samples making use of data analysis tools that classify reads against a sequence database. It includes a brief comparison of two database-based read classification tools, Sigma and Sparse, using a mock ...
The Benefits of Whole Genome Sequencing for Foodborne Outbreak Investigation from the Perspective of a National Reference Laboratory in a Smaller Country.
Reference Laboratories of smaller countries often show slower uptake of WGS, mainly because of significant investments required to generate and analyze data of a limited amount of samples. To facilitate this ...
Voedsel-en watergerelateerde infectieziekten, epidemiologische verslag, data 2017-2018
Publication Type: Sci. report, recommendat°, guidance doc., directive, monograph Authors: Stéphanie Jacquinet; Dieter Van Cauteren; Sofieke Klamer; Javiera Rebolledo Source: p.14 (2020) Health Topics: Hepatitis A, B, C, D and E Hépatites A, B, C, D et E ...
infections liées aux aliments et à l'eau, synthèse épidémiologique, data 2017-2018
Publication Type: Sci. report, recommendat°, guidance doc., directive, monograph Authors: Stéphanie Jacquinet; Dieter Van Cauteren; Sofieke Klamer; Javiera Rebolledo Source: p.14 (2020) Health Topics: Hepatitis A, B, C, D and E Hépatites A, B, C, D et E ...
Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates
extraction, are required to ensure robust and exchangeable WGS data. Data sharing between (inter)national laboratories is essential to support foodborne pathogen control, including outbreak investigation. This ...
Epidemiologische surveillance van VTEC infecties, data 2017-2018
Publication Type: Sci. report, recommendat°, guidance doc., directive, monograph Authors: Stéphanie Jacquinet; Florence Crombé; Denis Piérard Source: p.6 (2019) Abstract: Sinds de oprichting van het NRC in 2011 is het jaarlijks aantal gevallen van STEC in ...
Global and regional source attribution of Shiga toxin-producing Escherichia coli infections using analysis of outbreak surveillance data
Publication Type: Peer reviewed scientific article Authors: Sara M. Pires; Shannon Majowicz; Alexander Gill; Brecht Devleesschauwer Source: Epidemiology and Infection, Volume 147 (2019) Health Topics: Pathogene E. coli Pathogenic E. coli E. coli pathogèn ...
Voedsel-en watergerelateerde infectieziekten, epidemiologische verslag, data 2015-2016
Publication Type: Sci. report, recommendat°, guidance doc., directive, monograph Authors: Stéphanie Jacquinet; Sofieke Klamer; Javiera Rebolledo Source: p.172 (2018) Health Topics: Hepatitis A, B, C, D and E Hépatites A, B, C, D et E Hepatitis A, B, C, D ...