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Population Analysis of O26 Shiga Toxin-Producing Causing Hemolytic Uremic Syndrome in Italy, 1989-2020, Through Whole Genome Sequencing.
this study we describe the genomic characterization and population structure of 144 O26 STEC strains isolated from human sources in Italy in the period 1989-2020. A total of 89 strains belonged to ST21, ...
Severity of infection with the SARS-CoV-2 B.1.1.7 lineage among hospitalized COVID-19 patients in Belgium.
severity between hospitalized patients in Belgium infected with the SARS-CoV-2 variant B.1.1.7 and those infected with previously circulating strains. METHODS: The study is conducted within a causal ...
Whole-Genome Sequence Approach and Phylogenomic Stratification Improve the Association Analysis of Mutations With Patient Data in Influenza Surveillance.
exploring mutational effects in highly diverse Influenza A (H3N2) strains through considering the viral genetic background by using phylogenetic classification to stratify the samples. This resulted in ...
Shotgun metagenomics as a ONE Health tool for better protecting human health
laboratories, however without isolation and in a shorter time-frame. This could be achieved to the strain level even in samples with several E. coli strains. The method was also used to solve a Salmonella ...
Outbreaks of Foot-and-Mouth Disease in Burundi, East Africa, in 2016, Caused by Different Serotypes.
O and possibly serotype SAT1. The phylogenetic assessments showed the presence of topotypes A/Africa/G-I and SAT2 / IV, similarly to previously characterized virus strains from other countries in the ...
Listeria monocytogenes isolates from Cornu aspersum snails: Whole genome-based characterization and host-pathogen interactions in a snail infection model.
reactive oxygen species (ROS) generation in snails’ haemolymph. In contrast, the administration of the non-virulent strain which possesses a truncated mogR gene that regulates flagellar motility gene ...
High diversity of yeast species and strains responsible for vulvovaginal candidiasis in South-East Gabon
Publication Type: Peer reviewed scientific article Authors: M. Bignoumba; R. Onanga; B.S. Kumulungui; R.F. Kassa Kassa; Y. Mouanga Ndzime; K. Mbombe Moghoa; Dirk Stubbe; Pierre Becker Source: Journal of Medical Mycology (2022) Keywords: Africa Candida niv ...
Investigations upon the Improvement of Dermatophyte Identification Using an Online Mass Spectrometry Application.
by adding new reference spectra to the MSI-2 application. Nine libraries were set up, comprising an increasing number of spectra obtained from reference strains that were submitted to various culture ...
Strategy and Performance Evaluation of Low-Frequency Variant Calling for SARS-CoV-2 Using Targeted Deep Illumina Sequencing
curtail the virus spread. Additionally, emerging SARS-CoV-2 variants have increased the need for genomic surveillance to detect particular strains because of their potentially increased transmissibility, ...
Recombinant LSDV Strains in Asia: Vaccine Spillover or Natural Emergence?
Publication Type: Peer reviewed scientific article Authors: Frank Vandenbussche; Elisabeth Mathijs; Wannes Philips; Saduakassova, Meruyert; Ilse De Leeuw; Sultanov, Akhmetzhan; Andy Haegeman; Kris De Clercq Source: Viruses, Volume 14, Issue 7 (2022) Healt ...