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Zoekresultaten - 56 results

The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics

collections Cyanobacteria Genomics Gloeobacterales Metagenomics nextflow phylogenomics Phylogeny Singularity containers Workflow Abstract: Background: Microbial culture collections play a key role in taxonomy ...

Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.

an open-source workflow, Prokaryotic Awesome variant Calling Utility (PACU) (https://github.com/BioinformaticsPlatformWIV- ISP / PACU), for constructing SNP phylogenies using Illumina and/or ONT R9 ...

Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.

an open-source workflow, Prokaryotic Awesome variant Calling Utility (PACU) (https://github.com/BioinformaticsPlatformWIV- ISP / PACU), for constructing SNP phylogenies using Illumina and/or ONT R9 ...

Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.

an open-source workflow, Prokaryotic Awesome variant Calling Utility (PACU) (https://github.com/BioinformaticsPlatformWIV- ISP / PACU), for constructing SNP phylogenies using Illumina and/or ONT R9 ...

Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.

available on its performance for bacterial single-nucleotide polymorphism (SNP)-based outbreak investigation. We present an open-source workflow, Prokaryotic Awesome variant Calling Utility (PACU) ...

Pyrogen testing of phage therapeutic products

endotoxins, components of the cell wall of gram-negative bacteria which are released upon bacterial lysis.   In our routine phage quality control (QC) workflow, endotoxins are quantified using the Limulus ...

Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillanceAbstract

Publication Type: Peer reviewed scientific article Authors: Bram Bloemen; Mathieu Gand; Kevin Vanneste; Marchal, Kathleen; Nancy Roosens; Sigrid C.J. De Keersmaecker Source: Scientific Reports, Volume 13, Issue 1 (2023) Health Topics:  Health and environm ...

Design and Application of a Semi-automated Workflow including In Silico Models to support the Risk Assessment of Food Contact Material Substances

Publication Type: Scientific poster, presentation or proceeding Authors: Camille Streel; Ilse Van Overmeire; Gianluca Selvestrel; Alessandra Roncaglioni; Emilio Benfenati; Alessio Sommovigo; Alberto Manganaro; Els Van Hoeck; Birgit Mertens Source: BelTox ...

Validation of Fourier Transform Infrared Spectroscopy for Serotyping of Streptococcus pneumoniae.

this complicated the robustness and standardization potential of FT- IR spectroscopy. A rigorous laboratory workflow in combination with specific ANN models that account for environmental noise ...

Redesign and Validation of a Real-Time RT-PCR to Improve Surveillance for Avian Influenza Viruses of the H9 Subtype.

different origins and clades (Y439, Y280, G1), a bioinformatics workflow was optimized to extract relevant sequence data preparatory for oligonucleotides design. Analytical and diagnostic performances were ...

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